Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0738
         (776 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01520.1 68414.m00068 myb family transcription factor similar...    33   0.28 
At4g22110.2 68417.m03197 alcohol dehydrogenase, putative similar...    30   2.0  
At4g22110.1 68417.m03196 alcohol dehydrogenase, putative similar...    30   2.0  
At1g51160.1 68414.m05752 synbindin, putative similar to Swiss-Pr...    29   2.6  
At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein ...    29   3.4  
At1g52380.1 68414.m05911 Ran-binding protein 1 domain-containing...    29   4.5  
At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protei...    28   6.0  
At1g70620.2 68414.m08137 cyclin-related contains weak similarity...    28   7.9  
At1g70620.1 68414.m08138 cyclin-related contains weak similarity...    28   7.9  

>At1g01520.1 68414.m00068 myb family transcription factor similar to
           myb-related protein GI:2505876 from [Arabidopsis
           thaliana]
          Length = 287

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 212 CDASVVAAVQSRTSGVCLNVCDDTVS-GTRRTRLVTRTKESSXC 340
           CD S+ ++V     GV  N C  + S   +RTR+VT T +   C
Sbjct: 172 CDVSIPSSVIKEEFGVSENCCSTSSSRDKQRTRIVTETNDQESC 215


>At4g22110.2 68417.m03197 alcohol dehydrogenase, putative similar to
           alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
           esculentum]; contains Pfam zinc-binding dehydrogenase
           domain PF00107
          Length = 389

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/68 (32%), Positives = 32/68 (47%)
 Frame = +2

Query: 128 LKKIFSYASGPTQVNVVFSRFLP*CGRECDASVVAAVQSRTSGVCLNVCDDTVSGTRRTR 307
           ++ I  + +G  Q +VV   F P C  EC        +S  S  C    DD +S TRR  
Sbjct: 83  IESIGEHVNGFQQGDVVLPVFHPHC-EEC-----RDCKSSKSNWCARFADDFLSNTRRYG 136

Query: 308 LVTRTKES 331
           + +R K+S
Sbjct: 137 MTSRFKDS 144


>At4g22110.1 68417.m03196 alcohol dehydrogenase, putative similar to
           alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
           esculentum]; contains Pfam zinc-binding dehydrogenase
           domain PF00107
          Length = 389

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/68 (32%), Positives = 32/68 (47%)
 Frame = +2

Query: 128 LKKIFSYASGPTQVNVVFSRFLP*CGRECDASVVAAVQSRTSGVCLNVCDDTVSGTRRTR 307
           ++ I  + +G  Q +VV   F P C  EC        +S  S  C    DD +S TRR  
Sbjct: 83  IESIGEHVNGFQQGDVVLPVFHPHC-EEC-----RDCKSSKSNWCARFADDFLSNTRRYG 136

Query: 308 LVTRTKES 331
           + +R K+S
Sbjct: 137 MTSRFKDS 144


>At1g51160.1 68414.m05752 synbindin, putative similar to
           Swiss-Prot:Q9ES56 synbindin (TRS23 homolog) [Mus
           musculus]
          Length = 169

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 1   GLRRSRGRPYEFYSFRTRSDRVSFRSTHSDGIIKLITH 114
           G+ +  G+   F+SFRT + ++SF  T S   I L+TH
Sbjct: 82  GVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILVTH 119


>At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 437

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
 Frame = -2

Query: 310 KTGPASARNCIIADVQTNTTSPRLHGCDNRRVALASALRQETRKYDVDLR-RAGR 149
           KTG  S  NC  A        P       RR  + S LR      D DLR R GR
Sbjct: 17  KTGDCSRPNCTFAHGNAELRRPGESSFTGRRHNMDSDLRDRRHNMDSDLRDRLGR 71


>At1g52380.1 68414.m05911 Ran-binding protein 1 domain-containing
           protein / RanBP1 domain-containing protein weak
           similarity to SP|Q09717 Ran-specific GTPase-activating
           protein 1 (Ran binding protein 1) (RANBP1) (Spi1-binding
           protein) {Schizosaccharomyces pombe}; contains Pfam
           profile PF00638: RanBP1 domain
          Length = 440

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 200 CGRECDASVVAAVQSRTSGVCLNVCDDTVSGTRRT 304
           CG+  D  V A   ++      NVC++ V GT +T
Sbjct: 148 CGKSADVQVAATEVAQMVSCDTNVCNNAVEGTDQT 182


>At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protein
            similar to SP|Q05022 rRNA biogenesis protein RRP5
            {Saccharomyces cerevisiae}; contains Pfam profile
            PF00575: S1 RNA binding domain
          Length = 1838

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = +2

Query: 203  GRECDASVVAAVQSRTSGVCLNVCDDTVSGTRRTRLVTRTKESSXC 340
            G+   ASV A     TSG  L + D +VSGT  T    R K+ S C
Sbjct: 923  GQSVVASVKAVQNPLTSGRLLLLLD-SVSGTSETSRSKRAKKKSSC 967


>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 884

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 23/59 (38%), Positives = 29/59 (49%)
 Frame = -2

Query: 622 SSDESICTSESLRSSIRVSPDFDLTRHSSPSFGSQHLCQSAPSFTDWKRDASGVRKSRT 446
           SSD+S   S S R S+  SP     + SSPS        S  S  D KR +S  RK+R+
Sbjct: 825 SSDDSKRKSRSRRRSVSPSPVRSRRKRSSPS--------SDESSDDSKRKSSSKRKNRS 875


>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 897

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 23/59 (38%), Positives = 29/59 (49%)
 Frame = -2

Query: 622 SSDESICTSESLRSSIRVSPDFDLTRHSSPSFGSQHLCQSAPSFTDWKRDASGVRKSRT 446
           SSD+S   S S R S+  SP     + SSPS        S  S  D KR +S  RK+R+
Sbjct: 795 SSDDSKRKSRSRRRSVSPSPVRSRRKRSSPS--------SDESSDDSKRKSSSKRKNRS 845


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,634,679
Number of Sequences: 28952
Number of extensions: 313941
Number of successful extensions: 723
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)