Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0737
         (743 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    26   0.37 
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   4.5  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   6.0  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    21   7.9  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -3

Query: 336 SSPWRPAADMGT--NRRDISTYIPQ*IFKAAESIRTPPQMRCSSRSEPY 196
           +SP +P   + T  N+R  ST +   I+ +++  RT PQ+   S   PY
Sbjct: 440 NSPTKPYYKLKTANNKRPPSTELGTNIYTSSKRQRTSPQLSPMSSLPPY 488


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 457 PASXSRSKPDTPRSSEPILIP 395
           P   S+S+P+    S+P+L P
Sbjct: 171 PVDLSKSEPEKKTESQPMLWP 191


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 184 RIPWXSNAQAEKKTLPGXLG 125
           +IPW  NA+A  K   G  G
Sbjct: 330 QIPWDKNAEALAKWANGQTG 349


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 537 LYIFNMTLAKIVLRFGLDPDPRSP 608
           L +  + LA +V  F  DP  R+P
Sbjct: 444 LLVSKVALASVVKDFVFDPTERTP 467


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,837
Number of Sequences: 336
Number of extensions: 3896
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)