Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0737
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    32   0.099
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    31   0.23 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.70 
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    28   1.6  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   8.6  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    25   8.6  

>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 31.9 bits (69), Expect = 0.099
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = -1

Query: 644  RHDLRLG-RSAEGRRTRVRIQSET*DDFRECHIKYIQFLRPHYIKIQLAKTNITHE 480
            + D +LG + A   + +V + S+  D  +E H+KY+Q    + +++QLAK +I  E
Sbjct: 1053 KEDTKLGEKCANIVQLQVDLLSKLADQEKEKHLKYLQSSYKNSLEVQLAKLDIVKE 1108


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 432 GLEREXDAGRCRVWSMFVRYVRFSELYFNIMRPQKLYIF 548
           G  ++   G+  VW  +VR+V F E Y        LY++
Sbjct: 103 GRPQDNGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 630 ARKIRGRPENAGPDPVRNVRRFSRV 556
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 451 MLAGAGSGRCSCV-MFVLASCILI*CGLKNCIYLI*HSRKSSYVSDWIRT 597
           +L G   G  S   M  +A+C L+  G+   +Y      K++++SDWI T
Sbjct: 148 LLLGGSQGFSSTTGMNTVAACFLLPLGVM--VYTTLGGLKATFISDWIHT 195


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 370 FPYLHYSID*RLFTLETCCGYGYEPARHL 284
           +P+   S+D R+F LE+  GY  EP   L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 684 SLQNVPESRTKRKPTRLTARKIRGRPENAGPDPVRNV 574
           S +  P S    KP+    RK+  RP ++ P P+ ++
Sbjct: 163 SFRRSPPSSVHMKPSAFNGRKVSRRP-SSSPPPIPSI 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,131,953
Number of Sequences: 5004
Number of extensions: 66001
Number of successful extensions: 189
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)