Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0737
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199...    31   0.73 
07_01_1012 - 8576196-8576489,8576809-8577045                           28   6.8  
04_04_0830 + 28491556-28492103,28492713-28492806,28492968-28493054     28   9.0  
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892...    28   9.0  

>06_01_0268 +
           1989069-1989293,1989938-1990020,1990136-1990357,
           1990434-1990621,1990711-1990835,1990988-1991039,
           1991585-1991874,1992229-1992307,1992527-1992657
          Length = 464

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 458 ASIXFPFQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 333
           A +  P+Q + A  + A+P + V    C LP P+LF  L  L
Sbjct: 288 AKLYIPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329


>07_01_1012 - 8576196-8576489,8576809-8577045
          Length = 176

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 420 RGVSGLEREXDAGRCRVW 473
           R +S L RE D GRCR W
Sbjct: 32  RSMSRLSRESDQGRCRSW 49


>04_04_0830 + 28491556-28492103,28492713-28492806,28492968-28493054
          Length = 242

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -1

Query: 563 RECHIKYIQFLRPHYIKIQLAKTNITHEHRPDPAPASIXFPFQTRHAPVLRA 408
           R  HI  +  +   + +I  AKT  TH+    PA A + F  + R  P   A
Sbjct: 163 RAQHIILLVTILHAHPRIGFAKTKSTHKATTQPAAAGLIFRMRKRSVPASTA 214


>01_06_0565 +
           30287253-30287502,30287522-30289010,30289133-30289277,
           30289679-30289729
          Length = 644

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = -3

Query: 474 TRPGTGQHXLPVPNPTRPGPQS-QSLFRSYGSNLPTSLTYIILSTRGSSPWRP 319
           T PG G    P P+ T P P S  S     G + PT        + G+SP  P
Sbjct: 271 TTPGGGGGYTPTPSDTPPSPSSGSSRTTPGGCSTPTPCGTPPAPSSGTSPTTP 323


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,894,149
Number of Sequences: 37544
Number of extensions: 501820
Number of successful extensions: 1656
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1655
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)