Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0737
(743 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41543-11|AAP40530.1| 362|Caenorhabditis elegans Hypothetical p... 36 0.023
U41543-10|AAP40531.1| 374|Caenorhabditis elegans Hypothetical p... 36 0.023
U41543-9|AAB37021.2| 453|Caenorhabditis elegans Hypothetical pr... 36 0.023
Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical pr... 33 0.28
Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical p... 33 0.28
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 29 2.6
AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear recep... 29 3.5
AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear recep... 29 3.5
AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear recep... 29 3.5
AF047660-8|AAM54167.1| 526|Caenorhabditis elegans Nuclear hormo... 29 3.5
AF047660-7|AAM54166.1| 577|Caenorhabditis elegans Nuclear hormo... 29 3.5
AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormo... 29 3.5
AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormo... 29 3.5
AF022971-12|AAG23974.3| 229|Caenorhabditis elegans Hypothetical... 28 8.0
AC024792-5|AAF60685.2| 137|Caenorhabditis elegans Hypothetical ... 28 8.0
>U41543-11|AAP40530.1| 362|Caenorhabditis elegans Hypothetical
protein F46H5.2b protein.
Length = 362
Score = 36.3 bits (80), Expect = 0.023
Identities = 27/89 (30%), Positives = 40/89 (44%)
Frame = -1
Query: 509 QLAKTNITHEHRPDPAPASIXFPFQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALH 330
Q+ + NI++ P +PA TRHA L+ + PICR P+ + L
Sbjct: 186 QMVRPNISYSPSPRESPAQSP----TRHAHKLK---FQRAESPICRQPIKRKL-TVTTLA 237
Query: 329 LGDLLRIWVRTGATSPRTSLNEFSRPQRV 243
D+ R++V TSP + F PQ V
Sbjct: 238 ETDIKRLFVPRSNTSPLVTDKTFPYPQNV 266
>U41543-10|AAP40531.1| 374|Caenorhabditis elegans Hypothetical
protein F46H5.2c protein.
Length = 374
Score = 36.3 bits (80), Expect = 0.023
Identities = 27/89 (30%), Positives = 40/89 (44%)
Frame = -1
Query: 509 QLAKTNITHEHRPDPAPASIXFPFQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALH 330
Q+ + NI++ P +PA TRHA L+ + PICR P+ + L
Sbjct: 277 QMVRPNISYSPSPRESPAQSP----TRHAHKLK---FQRAESPICRQPIKRKL-TVTTLA 328
Query: 329 LGDLLRIWVRTGATSPRTSLNEFSRPQRV 243
D+ R++V TSP + F PQ V
Sbjct: 329 ETDIKRLFVPRSNTSPLVTDKTFPYPQNV 357
>U41543-9|AAB37021.2| 453|Caenorhabditis elegans Hypothetical
protein F46H5.2a protein.
Length = 453
Score = 36.3 bits (80), Expect = 0.023
Identities = 27/89 (30%), Positives = 40/89 (44%)
Frame = -1
Query: 509 QLAKTNITHEHRPDPAPASIXFPFQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALH 330
Q+ + NI++ P +PA TRHA L+ + PICR P+ + L
Sbjct: 277 QMVRPNISYSPSPRESPAQSP----TRHAHKLK---FQRAESPICRQPIKRKL-TVTTLA 328
Query: 329 LGDLLRIWVRTGATSPRTSLNEFSRPQRV 243
D+ R++V TSP + F PQ V
Sbjct: 329 ETDIKRLFVPRSNTSPLVTDKTFPYPQNV 357
>Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical
protein T11B7.4d protein.
Length = 1424
Score = 32.7 bits (71), Expect = 0.28
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = -3
Query: 486 ARTSTRPGTGQHXL--PVPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTR-GSSP--WR 322
+R ++ QH + P P P+ P P ++ +S NLP S+ + R G SP W
Sbjct: 393 SRNQSQQHYQQHVVQAPPPVPSNPPPSNEQQSQSRVQNLPDSVRSAVSPRRSGKSPRQWP 452
Query: 321 PAADMGTNR 295
P A TNR
Sbjct: 453 PPAMPTTNR 461
>Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical
protein T11B7.4d protein.
Length = 1424
Score = 32.7 bits (71), Expect = 0.28
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = -3
Query: 486 ARTSTRPGTGQHXL--PVPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTR-GSSP--WR 322
+R ++ QH + P P P+ P P ++ +S NLP S+ + R G SP W
Sbjct: 393 SRNQSQQHYQQHVVQAPPPVPSNPPPSNEQQSQSRVQNLPDSVRSAVSPRRSGKSPRQWP 452
Query: 321 PAADMGTNR 295
P A TNR
Sbjct: 453 PPAMPTTNR 461
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 536 FLRPHYIKIQLAKTNITHEHRPDPAPASIXFPFQTRHAPVLR 411
+ RPH IK+Q+ + RP PAP P+ + V R
Sbjct: 1987 YQRPHPIKVQVRPATKPYRPRPSPAPRIQPRPYNPQPVVVQR 2028
>AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 618
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 466 RHRPASXSRSKPDTPRSSEPILIPKLRIQFADFPYLHYSID 344
++ P+S S S+P TP + +P I D +H+ +D
Sbjct: 131 KNEPSSSSNSQPGTPAMGDRRAVPACAICGTDSTGIHFGVD 171
>AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 624
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 466 RHRPASXSRSKPDTPRSSEPILIPKLRIQFADFPYLHYSID 344
++ P+S S S+P TP + +P I D +H+ +D
Sbjct: 135 KNEPSSSSNSQPGTPAMGDRRAVPACAICGTDSTGIHFGVD 175
>AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 619
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 466 RHRPASXSRSKPDTPRSSEPILIPKLRIQFADFPYLHYSID 344
++ P+S S S+P TP + +P I D +H+ +D
Sbjct: 130 KNEPSSSSNSQPGTPAMGDRRAVPACAICGTDSTGIHFGVD 170
>AF047660-8|AAM54167.1| 526|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform b protein.
Length = 526
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 466 RHRPASXSRSKPDTPRSSEPILIPKLRIQFADFPYLHYSID 344
++ P+S S S+P TP + +P I D +H+ +D
Sbjct: 37 KNEPSSSSNSQPGTPAMGDRRAVPACAICGTDSTGIHFGVD 77
>AF047660-7|AAM54166.1| 577|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform a protein.
Length = 577
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 466 RHRPASXSRSKPDTPRSSEPILIPKLRIQFADFPYLHYSID 344
++ P+S S S+P TP + +P I D +H+ +D
Sbjct: 88 KNEPSSSSNSQPGTPAMGDRRAVPACAICGTDSTGIHFGVD 128
>AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform d protein.
Length = 659
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 466 RHRPASXSRSKPDTPRSSEPILIPKLRIQFADFPYLHYSID 344
++ P+S S S+P TP + +P I D +H+ +D
Sbjct: 170 KNEPSSSSNSQPGTPAMGDRRAVPACAICGTDSTGIHFGVD 210
>AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform c protein.
Length = 733
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 466 RHRPASXSRSKPDTPRSSEPILIPKLRIQFADFPYLHYSID 344
++ P+S S S+P TP + +P I D +H+ +D
Sbjct: 244 KNEPSSSSNSQPGTPAMGDRRAVPACAICGTDSTGIHFGVD 284
>AF022971-12|AAG23974.3| 229|Caenorhabditis elegans Hypothetical
protein C31B8.1 protein.
Length = 229
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 435 NPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSP 328
+P + P +Q LF S+G LP I + SSP
Sbjct: 19 SPFKASPSNQKLFISFGVGLPIFFQMCIFTASYSSP 54
>AC024792-5|AAF60685.2| 137|Caenorhabditis elegans Hypothetical
protein Y48G1A.2 protein.
Length = 137
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 469 TRHRPASXSRSKPDTPRSSEPILIPKLRIQFADFPYLH 356
T HRP + S SK + E +L +R+Q A PY+H
Sbjct: 4 TPHRPRTNSESKLG---AREQLLRDSIRLQVASEPYVH 38
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,668,076
Number of Sequences: 27780
Number of extensions: 388930
Number of successful extensions: 1157
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -