Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0737
(743 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g23300.1 68415.m02781 leucine-rich repeat transmembrane prote... 31 0.61
At2g29510.1 68415.m03584 expressed protein 29 3.3
At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative... 28 5.7
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 5.7
At5g22390.1 68418.m02612 expressed protein 27 9.9
At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacu... 27 9.9
At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacu... 27 9.9
At3g56510.1 68416.m06284 TBP-binding protein, putative similar t... 27 9.9
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic... 27 9.9
>At2g23300.1 68415.m02781 leucine-rich repeat transmembrane protein
kinase, putative
Length = 773
Score = 31.5 bits (68), Expect = 0.61
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 2 EFGTRNPVPIPEPGS-GTVS-IIVPSSLKTSVRRGNPKW 112
EFGT P P P P S G +S P SL+ + NPKW
Sbjct: 634 EFGTIGPTPSPSPSSVGPISPYCAPESLRN--LKPNPKW 670
>At2g29510.1 68415.m03584 expressed protein
Length = 839
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 674 MCPNRARNENRHDLRLGRSAEGRRTRVRIQSET*DDFREC 555
+CP R ENR R+GR+A G R V+ +S ++C
Sbjct: 61 VCPKRL--ENRLKSRIGRTASGERDLVKYKSYVPSYIKKC 98
>At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative
strong similarity to probable NADP-dependent
oxidoreductase (zeta-crystallin homolog) P1
[SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
Arabidopsis thaliana
Length = 239
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 599 RVRIQSET*DDFRECHIKYIQFLRPH 522
R+RIQ DF + + K+++FL PH
Sbjct: 172 RIRIQGFVVSDFYDEYSKFLEFLHPH 197
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 249 ESIRTPPQMRCSSRSEPYLPSIGFHGXRTLRQK 151
+S + P R ++PYLPS G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247
>At5g22390.1 68418.m02612 expressed protein
Length = 202
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 128 EXSGKSFLFCLSVRXPWNPIEG 193
+ S KSFL LS PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38
>At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacum,
EMBL:AB009883
Length = 918
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = -1
Query: 488 THEHRPDPAPASIXFPFQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 333
+H H P A AS P++ V++ SE D R PLP L YR +L
Sbjct: 81 SHSHSPLAAAASASAPYEVESRTVVKV-ARSEPRDGERRSPLP-LVYRSPSL 130
>At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacum,
EMBL:AB009883
Length = 918
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = -1
Query: 488 THEHRPDPAPASIXFPFQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 333
+H H P A AS P++ V++ SE D R PLP L YR +L
Sbjct: 81 SHSHSPLAAAASASAPYEVESRTVVKV-ARSEPRDGERRSPLP-LVYRSPSL 130
>At3g56510.1 68416.m06284 TBP-binding protein, putative similar to
TBP-binding protein ABT1 GI:6518527 from [Mus musculus]
Length = 257
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/68 (25%), Positives = 27/68 (39%)
Frame = -2
Query: 220 VLFAFRTISPFYRIPWXSNAQAEKKTLPGXLGGVFRPLWVTPSNTRF*RRGNDY*NGSAA 41
+L + + Y P S AQ +K G G F WV + +R D NG
Sbjct: 69 ILAQYGELGRIYLAPEDSEAQVHRKRAGGFRGQRFSEGWVEFAKKSVAKRVADMLNGEQI 128
Query: 40 GFRNRNRI 17
G + ++ +
Sbjct: 129 GGKKKSSV 136
>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
to low affinity calcium antiporter CAX2 (GI:1488267)
[Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 441
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 56 SIIVPSSLKTSVRRGNPKWPEDAAEXSGKSFLFC--LSVRXPWNPI 187
S++ SL TS + PK P+++ S K +FC L++ P+ P+
Sbjct: 41 SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,904,833
Number of Sequences: 28952
Number of extensions: 369815
Number of successful extensions: 1083
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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