Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0735
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    29   0.99 
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.7  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    28   1.7  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    27   3.0  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    27   4.0  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   4.0  
SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.3  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    26   5.3  
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr...    26   5.3  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    26   7.0  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    26   7.0  
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch...    26   7.0  

>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 262 LHSRRGCNVRDRVLGMLWSDTRESLHGRHVRNLFAGDHH 378
           L SRR  N + +V    WS+  E +H +  RNLF  + H
Sbjct: 12  LFSRRFPNWKRKVQTDSWSNVPEHIHSKIGRNLFQKEGH 50


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 24/88 (27%), Positives = 34/88 (38%)
 Frame = +2

Query: 413 YGESIKESIMDGVGVLFKKRSDANADEAAEAVSLNCNDSSNAAVTLGAINYGQFTLPESC 592
           +GE I+E +       ++K  +     + EA S   ND S          YGQ      C
Sbjct: 270 FGEEIEEVVAS-----YEKNYNGRCYISEEACSKATNDCSGHG---RCSKYGQLDSCYVC 321

Query: 593 CVKKSILSTFAGNNCTVDAANPGLRSQD 676
               S++S  AG N T+  A      QD
Sbjct: 322 QCSNSVVSNAAGQNKTIRWAGESCSKQD 349


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 445 IHNALL-DALAVGEEEDADHHLHNDDHQQKD 356
           +H+ +L D LA     D D  L  D+H QKD
Sbjct: 56  LHDTILPDVLAASYRHDIDTALSTDEHTQKD 86


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -2

Query: 280 SPDDYEDPRPTARWVFSKSLTMVQFIRNATPIPTSSRPRSATTRLKKNSTYFTKLVPHPM 101
           S D ++D  P A  +  K     Q+   A P PTS R  +   +L  N    + ++P P 
Sbjct: 105 SEDTFKDKLPRAT-IPVKPEPQPQYKIPAAPAPTSKRVVNRGLKLNTNLRQASPILPSPS 163

Query: 100 LR 95
           L+
Sbjct: 164 LK 165


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = +2

Query: 470 RSDANADEAAEAVSLNCNDSSNAAVTLGAINYGQFTLPESCCVKKSILSTFAGNNCTVDA 649
           R + N D+ +   SLN    SN A   G ++     +P S  +++   S  + NN   +A
Sbjct: 493 RRNTNDDDQS---SLNSQQLSNQAKAQGEVSPTLSFVPSSHSMEQGNGSVASANNAQSEA 549

Query: 650 ANPGLRSQDSASSTR 694
           A   + S    S  R
Sbjct: 550 ATRSINSISEVSEVR 564


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 113 NEFCEICAILLQPGRRAPRPAASGDWSSVPDELDHGQR 226
           +E  E+    L+P  RAPRP+ S    S   E+ H  R
Sbjct: 77  DEKLEVDFAFLEPPERAPRPSISTRSRSQSPEVQHRDR 114


>SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = -3

Query: 90  YFLFL---FHNKHFTRGSFRLRSARPSRLVXNS 1
           Y  FL   + N HFTR S +  S R  RLV ++
Sbjct: 203 YIFFLRMRYTNSHFTRASIKAVSLRMDRLVADN 235


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -2

Query: 403 EDADHHLHNDDHQQKDCVRDDHAVTLAYRSTASQERDHEHYSPDDY 266
           E+ +    N + Q+     DDH     +    SQE  HEH    D+
Sbjct: 505 EEFEEEKDNVEAQKMGYTNDDHVSQHEHTHENSQEHHHEHNHNHDH 550


>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 208

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = -2

Query: 373 DHQQKDCVRDDHAVTLAYRSTASQER 296
           D   KD V DD  VTL    TA QER
Sbjct: 44  DFLTKDVVVDDKLVTLQLWDTAGQER 69


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 523 RQFECCGNTGRYQLRPVHVARVLLRQEEHPLYLRRQQLH 639
           R F C G   R  +     AR +  ++ + L+L+ + LH
Sbjct: 113 RTFTCLGRGNRLYMLSTEPARAMGYRDSYLLFLKHRSLH 151


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 412 GEEEDADHHLHNDDHQQKDCVRDDH 338
           G ++   HH H+ DH   D    DH
Sbjct: 10  GSDDSTHHHTHDYDHHNHDHHGHDH 34


>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
           Yml6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 226 SLTMVQFIRNATPIPTSSRPRSATTRLKKNSTYFTKLVPHPML 98
           SL + +F +  T +    +P S T  +  NS+ FTK  P P L
Sbjct: 218 SLIVEKFAQRNT-LSDMDQPASLTAYVDANSSSFTKSKPEPSL 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,495
Number of Sequences: 5004
Number of extensions: 55134
Number of successful extensions: 193
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)