Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0735
(782 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800 33 0.19
10_06_0171 + 11466934-11466990,11467073-11468312,11468450-114685... 30 1.8
02_02_0310 - 8842286-8843314 30 1.8
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970... 30 2.4
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 29 3.2
03_04_0035 - 16685674-16686376,16686594-16686640 29 5.5
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 28 7.3
05_03_0475 + 14486969-14487140,14487215-14487338,14487424-144875... 28 7.3
01_06_0288 - 28228673-28228744,28228866-28229071,28229316-282295... 28 7.3
09_02_0338 + 7426999-7428322,7428390-7428646 28 9.6
06_03_1269 + 28865236-28865819,28866124-28866754 28 9.6
02_05_0181 - 26522849-26522932,26523053-26523184,26523263-265233... 28 9.6
>09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800
Length = 863
Score = 33.5 bits (73), Expect = 0.19
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 581 PESCCVKKSILSTFAGNNCTVDAA 652
P SCCV+K I+S F NCT D A
Sbjct: 53 PASCCVRKIIVSNFLPLNCTKDEA 76
>10_06_0171 +
11466934-11466990,11467073-11468312,11468450-11468596,
11469650-11470140
Length = 644
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 427 DALAVGEEEDADHHLHNDDHQQKDCVRDDHAV 332
D + EE+D DHH H+ H D +HA+
Sbjct: 320 DTFRIAEEDDDDHHHHHHYHGDADDDDGEHAM 351
>02_02_0310 - 8842286-8843314
Length = 342
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -2
Query: 391 HHLHNDDHQQKDCVRDDHAVTLAYRSTA-SQERDHEHYSPDDYE 263
HH H+D++++ + + D A R + + R H H+ DD+E
Sbjct: 194 HHHHHDENEEDEHEQADEASPAVERLISFHRRRHHHHHHEDDHE 237
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Frame = -2
Query: 391 HHLHNDDHQQKD----CVRDDHAVTLAYRSTASQERDHEHYSPDDYE 263
HH H DDH+Q++ R H S +R H H+ DD E
Sbjct: 229 HHHHEDDHEQREEGAPMKRFRHHHEEEEESEMRTKRFHHHHHKDDDE 275
>03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,
9700145-9700235,9700698-9700759,9701256-9702962,
9703789-9703870,9703972-9704057,9704855-9704968,
9705113-9705163,9705261-9705358,9707084-9707546
Length = 1367
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Frame = -2
Query: 427 DALAVGEEEDADHHLHNDDHQQKDCVRDDHAVTLAYRSTASQERDHEHYSPDD-----YE 263
DA G E+A H H C RDD V + +S+ +D++ DD
Sbjct: 1209 DAKNCGSGEEAGDHDSERTHGTLPCSRDDEPVHVPSDFGSSKSQDNQRDEDDDRLALVLV 1268
Query: 262 DPRPTA 245
DP+P A
Sbjct: 1269 DPQPNA 1274
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = -2
Query: 289 EHYSPDDYEDPRPTARWVFSKSLTMVQFIRNATPI--PTSSRPRSATTRLKKNSTYFTKL 116
E Y+P D E + V S++L ++ ++N T + S+ R+ K+++Y
Sbjct: 1580 EQYTPQDVEMLFSSFSEVVSEALLFLRNVKNITLYVKESDSQEMKLVHRVSKHNSYEMAK 1639
Query: 115 VPHPMLRALFFISVSQ 68
PH + L FI+ +Q
Sbjct: 1640 EPHALNTMLAFINGNQ 1655
>03_04_0035 - 16685674-16686376,16686594-16686640
Length = 249
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 436 ALLDALAVGEEEDADHHLHNDDHQQK 359
ALL L E++D DHH H+ H +
Sbjct: 224 ALLGQLEAEEDDDGDHHHHHHHHHHQ 249
>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = -2
Query: 418 AVGEEEDADHHLH--NDDHQQKDC 353
++ EE +DHH H N++H+ +DC
Sbjct: 969 SISIEESSDHHEHHHNEEHKAEDC 992
>05_03_0475 +
14486969-14487140,14487215-14487338,14487424-14487559,
14487663-14488997
Length = 588
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 778 RRHKRERAXYHXNTSNTESQRRL*ACSISGRARR 677
R +RE A H ++ N++S+R++ + S ARR
Sbjct: 374 RNARREEAVTHESSRNSDSRRKIDVANTSAAARR 407
>01_06_0288 -
28228673-28228744,28228866-28229071,28229316-28229554,
28229649-28229705,28229787-28229873,28229963-28230507,
28231574-28231714
Length = 448
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = +1
Query: 382 ASGDQRPPLHLRREH---QGEHYGWRRR 456
A+ + PL LRRE +GE GWRRR
Sbjct: 3 AAAREEQPLLLRREEGEEEGEEVGWRRR 30
>09_02_0338 + 7426999-7428322,7428390-7428646
Length = 526
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +2
Query: 437 IMDGVGVLFKKRSDANADEAAEAVSLNCNDSSNAAVTLGAINYGQFTLPESCCVKKS 607
+MD + L + D D A S++ ++ V G G+F LP SCC S
Sbjct: 83 LMDAIKALENEARDHYLDRAE---SMSSSEFVQMLVIDGCYILGKFVLPHSCCPSTS 136
>06_03_1269 + 28865236-28865819,28866124-28866754
Length = 404
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 271 RRGCNVRDRVLGMLWSDTRESLHGRHVRN 357
RR C+V D V +W ++HGR R+
Sbjct: 214 RRRCSVFDVVTAAIWQCRTRAIHGRRCRS 242
>02_05_0181 -
26522849-26522932,26523053-26523184,26523263-26523329,
26523800-26524186,26524259-26524360,26524983-26525132,
26525552-26525636,26525743-26525769,26525858-26526116,
26526659-26526751,26526921-26527013,26527122-26527289,
26527436-26527594,26528214-26528273,26528392-26528487
Length = 653
Score = 27.9 bits (59), Expect = 9.6
Identities = 22/91 (24%), Positives = 38/91 (41%)
Frame = -2
Query: 499 GGLVCVSVRSLFE*HADAIHNALLDALAVGEEEDADHHLHNDDHQQKDCVRDDHAVTLAY 320
G +V + RS +E + N +L E +A+ HQ + L
Sbjct: 423 GTMVFLKHRS-YEAKVAFLENGNTHSLTASAENNANGVQTLQYHQNRHRKTICRTNCLIC 481
Query: 319 RSTASQERDHEHYSPDDYEDPRPTARWVFSK 227
+ T++ E++ E +PD T +WV+SK
Sbjct: 482 KGTSTSEQNSEDENPDSSRTACETPKWVWSK 512
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,220,033
Number of Sequences: 37544
Number of extensions: 427694
Number of successful extensions: 1559
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1556
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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