Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0735
         (782 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical pr...    46   2e-05
AL132948-5|CAC51071.1|  321|Caenorhabditis elegans Hypothetical ...    41   0.001
U41028-2|AAA82355.1|  233|Caenorhabditis elegans Tetraspanin fam...    39   0.004
Z92824-4|CAB07307.2|  395|Caenorhabditis elegans B0413.2 protein.      38   0.006
U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin fam...    36   0.025
Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical pr...    35   0.057
AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical ...    31   0.70 
U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin fam...    30   1.6  
Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis def...    30   2.1  
Z82285-8|CAB05297.2|  393|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AL031635-1|CAA21039.2|  487|Caenorhabditis elegans Hypothetical ...    29   5.0  
U44759-1|AAA86906.1|  405|Caenorhabditis elegans troponin T prot...    28   8.7  
U43282-4|AAA83615.1|  405|Caenorhabditis elegans Muscle position...    28   8.7  
AC024796-11|AAK29890.2|  828|Caenorhabditis elegans Hypothetical...    28   8.7  

>Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical
           protein T23D8.2 protein.
          Length = 232

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 24/115 (20%), Positives = 55/115 (47%)
 Frame = +2

Query: 260 IFIVVGAVMFVIAFLGCCGAIRESHCMVVTYAXXXXXXXXXXXXXXXXXFTYGESIKESI 439
           + +V+G++  ++ FLGCCGAIRE++C+ V++A                 +   +S +  I
Sbjct: 55  LLLVIGSLCTLLGFLGCCGAIRENYCLTVSFAVLLALLITCEIAAVIIGYALHDSFRLGI 114

Query: 440 MDGVGVLFKKRSDANADEAAEAVSLNCNDSSNAAVTLGAINYGQFTLPESCCVKK 604
            + +     +  ++   E+A   +    +      +   + +   T+P+SCC+++
Sbjct: 115 GNQLQTGMVRYHESRGVESAWDKTHQLFECCGVTNSSDWLTF--TTIPDSCCIEE 167


>AL132948-5|CAC51071.1|  321|Caenorhabditis elegans Hypothetical
           protein Y39B6A.6 protein.
          Length = 321

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = +2

Query: 254 SWIFIVVGAVMFVIAFLGCCGAIRESHCMVVTYA 355
           S+I IV+GAVM V+A LGCCG    S   ++ Y+
Sbjct: 114 SYIIIVLGAVMMVVAMLGCCGITGRSRPFLIIYS 147


>U41028-2|AAA82355.1|  233|Caenorhabditis elegans Tetraspanin family
           protein 9 protein.
          Length = 233

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +2

Query: 257 WIFIVVGAVMFVIAFLGCCGAIRES 331
           WI + VGA++F++ F GCCGA  ES
Sbjct: 69  WILVAVGALLFLVGFFGCCGAGCES 93


>Z92824-4|CAB07307.2|  395|Caenorhabditis elegans B0413.2 protein.
          Length = 395

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +2

Query: 254 SWIFIVVGAVMFVIAFLGCCGAIRESHCMVVTYA 355
           S+I IV+GAVM V+A  GCCG    S   ++ Y+
Sbjct: 225 SYIXIVLGAVMMVVAMXGCCGITGRSRPFLIIYS 258


>U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin family
           protein 11 protein.
          Length = 317

 Score = 36.3 bits (80), Expect = 0.025
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +2

Query: 212 DHGQR-LTEDPSCCRS--WIFIVVGAVMFVIAFLGCCGAIRESHCMVVTYA 355
           D G R L   P+  R   ++  V G ++ V+AFLGCCGA +E   ++  Y+
Sbjct: 66  DAGLRDLATKPTAVRQFGYLLFVGGFIVIVVAFLGCCGAAKEWRPLLCCYS 116


>Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical
           protein T14G10.6 protein.
          Length = 308

 Score = 35.1 bits (77), Expect = 0.057
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 254 SWIFIVVGAVMFVIAFLGCCGAIRESHCMVVTYA 355
           +W  ++VG + F+I F GC G++RE+   +  Y+
Sbjct: 85  TWPLLIVGFLTFIIGFSGCVGSLRENTSFLTFYS 118


>AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical
           protein Y46C8AL.2 protein.
          Length = 456

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -3

Query: 453 PTPSIMLSLMLSP*VKRRTLITTCTMMITSKKIAYVTTMQ--*LSRIAPQHPKNAITNIT 280
           PTPS M S   +P   + T  T  TM  T       TTM+    +   P   K+  T  T
Sbjct: 153 PTPSTMKSTPTTPTTIKSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPT 212

Query: 279 APTTMK 262
            PTTMK
Sbjct: 213 TPTTMK 218


>U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical
           protein K09H11.4 protein.
          Length = 630

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 376 DDHQQKDCVRDDHAVTLAYRSTASQERDHEHYSPDDYEDPRP 251
           +D ++KD  R+DH      +S   ++ +HE + P  +  P P
Sbjct: 502 EDGREKDDFREDHGREDHGKSEVPEKVEHEQHPPQSHGSPHP 543


>U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin family
           protein 17 protein.
          Length = 243

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +2

Query: 254 SWIFIVVGAVMFVIAFLGCCGAIRESHCMVVTY 352
           +++ +V G    ++ FLG CGA+  S  +++ +
Sbjct: 27  AYVSLVCGCAQLLVGFLGLCGAVNRSRFLLLAF 59


>Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical
           protein F33C8.3 protein.
          Length = 282

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +2

Query: 257 WIFIVVGAVMFVIAFLGCCGAIRESHCMVVTY 352
           W  +  GA++ ++ + GC GA + + C +  +
Sbjct: 58  WFLVGAGAIIILVGYFGCIGAWKMNQCALAFF 89


>U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis defect
           protein 3, isoformb protein.
          Length = 1178

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
 Frame = +2

Query: 494 AAEAVSLNC--NDSSNAAVTLGAINYGQFTLPES---CCVKKSILSTFAGNNCTVDAANP 658
           AA  +S N   +DSS     +G +NYG F    +   C  + S L+ +  +   +DA   
Sbjct: 550 AASTLSSNAQLSDSSGRPGAVGLVNYGNFCYRNAGIQCLARVSPLTQYFLDEDNLDAIKR 609

Query: 659 G-LRSQDSASST 691
           G LR  D+A +T
Sbjct: 610 GNLRRGDAAETT 621


>Z82285-8|CAB05297.2|  393|Caenorhabditis elegans Hypothetical
           protein T28F3.3 protein.
          Length = 393

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 406 EEDADHHLHNDDHQQKDCVRDDH 338
           EE  DHH H+ DH  +  +R +H
Sbjct: 45  EELHDHHEHDHDHHDEQLIRKNH 67


>AL031635-1|CAA21039.2|  487|Caenorhabditis elegans Hypothetical
           protein Y47D3B.1 protein.
          Length = 487

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 250 SVVDLHSRRGCNVRDRVLGMLWSDTRE-SLHGRHVRNLFAGD 372
           ++ D   R+  N R  +LG  W D RE ++ GR     F GD
Sbjct: 6   NIGDTFLRKDINTRQIILGSFWRDEREQNVDGRFAVIHFLGD 47


>U44759-1|AAA86906.1|  405|Caenorhabditis elegans troponin T
           protein.
          Length = 405

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +1

Query: 280 CNVRDRVLGMLWSDTRESLHGRHVR--NLFAGDHHCASGDQRPPLHLRREHQGEHYGWRR 453
           C V+D V G+L +D +E + G H R   L A  +      +R    ++  H+ +    R 
Sbjct: 219 CRVQD-VSGLLPNDLKERIRGLHARIVKLEAEKYDLEKRRERQDYDMKELHERQRQAARN 277

Query: 454 RVIQK 468
           + ++K
Sbjct: 278 KALKK 282


>U43282-4|AAA83615.1|  405|Caenorhabditis elegans Muscle positioning
           protein 2 protein.
          Length = 405

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +1

Query: 280 CNVRDRVLGMLWSDTRESLHGRHVR--NLFAGDHHCASGDQRPPLHLRREHQGEHYGWRR 453
           C V+D V G+L +D +E + G H R   L A  +      +R    ++  H+ +    R 
Sbjct: 219 CRVQD-VSGLLPNDLKERIRGLHARIVKLEAEKYDLEKRRERQDYDMKELHERQRQAARN 277

Query: 454 RVIQK 468
           + ++K
Sbjct: 278 KALKK 282


>AC024796-11|AAK29890.2|  828|Caenorhabditis elegans Hypothetical
           protein Y48G1C.8 protein.
          Length = 828

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
 Frame = -2

Query: 670 GPQPGIRGVDRAVVAGE-GREDALLD-ATGLGQRELAVVDS----AQCYRSIRTVVAIQR 509
           GP P +R   RA+V  + G+     D A G    +L +V++    A+C R  + ++ IQR
Sbjct: 471 GPSPRVRSTRRAIVQDDNGQFQMAKDTAGGWHSSQLCLVETMSVLARCPRLRKRLIYIQR 530

Query: 508 NS 503
           N+
Sbjct: 531 NN 532


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,424,405
Number of Sequences: 27780
Number of extensions: 328493
Number of successful extensions: 1212
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)