Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0735
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    56   3e-10
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   4.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.8  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 56.4 bits (130), Expect = 3e-10
 Identities = 21/30 (70%), Positives = 28/30 (93%)
 Frame = +2

Query: 266 IVVGAVMFVIAFLGCCGAIRESHCMVVTYA 355
           IV+G+++FVI+F GCCGAIRESHCM +T+A
Sbjct: 56  IVLGSIIFVISFFGCCGAIRESHCMTITFA 85


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -3

Query: 138 IAHISQNSFHIPC*EHYFLFLFHNKHFTRGSFRLRSARPSR 16
           I + S +SF+IPC     +FL++N  F     R R AR +R
Sbjct: 344 IIYSSLSSFYIPC--IIMVFLYYN-IFKALRNRARKARANR 381


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 358  LFAGDHHCASGDQRPPLHLRREHQGEHYGWRRR 456
            L+       + DQ+P  +L  +   + YG RR+
Sbjct: 963  LYKSSESSCNPDQKPTEYLLEDSMKQQYGKRRK 995


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 17/71 (23%), Positives = 31/71 (43%)
 Frame = -2

Query: 529 TVVAIQRNSLGGLVCVSVRSLFE*HADAIHNALLDALAVGEEEDADHHLHNDDHQQKDCV 350
           +++ +    L GL  ++ R LF      +H+A  D + VGE+  A   L     + K  +
Sbjct: 388 SILFVSSPFLNGLEGLTGRGLFISDIP-LHDATRDVILVGEQARAQDGLRRRMDKLKSSI 446

Query: 349 RDDHAVTLAYR 317
            + +    A R
Sbjct: 447 EEANLAVSAER 457


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 12/49 (24%), Positives = 20/49 (40%)
 Frame = +1

Query: 562 LRPVHVARVLLRQEEHPLYLRRQQLHGRRRESRAAVPRFGELYQKWNKP 708
           L  V +  + + Q      L    L+GR +  +   P  GE+ Q  + P
Sbjct: 581 LEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPTVGEISQDGSSP 629


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/19 (47%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
 Frame = -2

Query: 391 HHLHNDDHQ-QKDCVRDDH 338
           HHL N  H  Q   V+D H
Sbjct: 142 HHLQNHHHHLQSTAVQDHH 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,721
Number of Sequences: 438
Number of extensions: 4337
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)