Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0735
(782 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g15730.1 68414.m01887 PRLI-interacting factor L, putative str... 31 0.65
At1g32400.2 68414.m03998 senescence-associated family protein co... 31 0.86
At1g32400.1 68414.m03997 senescence-associated family protein co... 31 0.86
At2g27940.1 68415.m03387 zinc finger (C3HC4-type RING finger) fa... 31 1.1
At2g04620.1 68415.m00470 cation efflux family protein potential ... 31 1.1
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 31 1.1
At5g67300.1 68418.m08486 myb family transcription factor contain... 30 2.0
At5g60930.1 68418.m07643 chromosome-associated kinesin, putative... 30 2.0
At5g41760.1 68418.m05084 nucleotide-sugar transporter family pro... 29 4.6
At5g47920.1 68418.m05919 expressed protein similar to unknown pr... 28 6.1
At1g59550.1 68414.m06696 UBX domain-containing protein contains ... 28 6.1
At1g55600.1 68414.m06364 WRKY family transcription factor simila... 28 6.1
>At1g15730.1 68414.m01887 PRLI-interacting factor L, putative strong
similarity to PRLI-interacting factor L GI:11139268 from
[Arabidopsis thaliana]; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 448
Score = 31.5 bits (68), Expect = 0.65
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -2
Query: 418 AVGEEEDADHHLHNDDHQQKDCVRDDHAVTLAYRSTASQERDHE-HYSPDDYEDP 257
+V EEE D H+D H DC DH + E +HE H+S D DP
Sbjct: 305 SVNEEEKEDREGHDDHHHGHDC--HDH------HNEHEHEHEHEHHHSHDHTHDP 351
>At1g32400.2 68414.m03998 senescence-associated family protein
contains Pfam profile PF00335: Tetraspanin family
Length = 280
Score = 31.1 bits (67), Expect = 0.86
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 257 WIFIVVGAVMFVIAFLGCCGAIRESHCMVVTYA 355
++FI +G +FVI+ GC G S C + Y+
Sbjct: 83 YLFIGIGVALFVISCCGCVGTCSRSVCCLSCYS 115
>At1g32400.1 68414.m03997 senescence-associated family protein
contains Pfam profile PF00335: Tetraspanin family
Length = 280
Score = 31.1 bits (67), Expect = 0.86
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 257 WIFIVVGAVMFVIAFLGCCGAIRESHCMVVTYA 355
++FI +G +FVI+ GC G S C + Y+
Sbjct: 83 YLFIGIGVALFVISCCGCVGTCSRSVCCLSCYS 115
>At2g27940.1 68415.m03387 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 237
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -1
Query: 335 SDSRVSLHSIPRTRSRTLQPRRL*RSTTDSK 243
S S V + S+PRTRS + PRRL S S+
Sbjct: 78 SSSTVDISSMPRTRSSRMSPRRLSTSVVVSR 108
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -2
Query: 457 HADAIHNALLDALAVGEEEDADHHLHNDDHQQKDCVRD-DHAVTLAYRSTASQERDHEHY 281
H H+ D+ E + DHH H+ H+ ++C + DH + +H+H+
Sbjct: 577 HKHEEHHQHSDSHKHEEHHEHDHHHHSHSHKHEECNHNHDHEHQSHSHNHEECNHNHDHH 636
Query: 280 S 278
S
Sbjct: 637 S 637
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -2
Query: 403 EDADHHLHNDDHQQKDCVRDDHAVTLAYRSTASQERDHEHYS 278
++ +HH H+D H+ + + H + +++ E DH H+S
Sbjct: 566 KNEEHHQHSDSHKHE----EHHQHSDSHKHEEHHEHDHHHHS 603
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = -2
Query: 418 AVGEEEDADHHLHNDDHQQKDCVRDDHAVTLAYRSTASQERDHEHYSPDDYEDP 257
+V E++ DHH H+ DH DH DH H+S D DP
Sbjct: 302 SVNEDDKGDHHDHDHDHHHDHNHDHDH--------HHHDGHDHHHHSHDHTHDP 347
>At5g67300.1 68418.m08486 myb family transcription factor contains
PFAM profile: myb DNA binding domain PF00249
Length = 305
Score = 29.9 bits (64), Expect = 2.0
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = -2
Query: 349 RDDHAVTLAYRSTASQE-RDHEHYSPDDYEDPRPTARWVFSKSLTMVQFIRNATPIPTSS 173
R D+AV + ST ++ ++H D ED RP R V + S +V + + PT S
Sbjct: 90 RTDNAVKNHWNSTLKRKCGGYDHRGYDGSEDHRPVKRSVSAGSPPVVTGLYMSPGSPTGS 149
Query: 172 RPRSATTRLKKNSTYFTKLVPHP 104
++T S K VP P
Sbjct: 150 DVSDSSTIPILPSVELFKPVPRP 172
>At5g60930.1 68418.m07643 chromosome-associated kinesin, putative
microtubule-associated motor KIF4 , Mus musculus,
PIR:A54803
Length = 1294
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = -2
Query: 454 ADAIHNALLDALAVGEEEDADHHLHNDDHQQKDCVRDDHAVTLAYRSTASQERDHEHYSP 275
AD +H A+ ++ AD +L N+ +K R+ V ++ S+ DHE P
Sbjct: 938 ADLVHQVKAQTSAM-KKLSADENLKNEHSMKKQETRNSTIVLEDMDTSDSEASDHEREDP 996
Query: 274 DDYEDPRP 251
D ++ +P
Sbjct: 997 DLDDEWKP 1004
>At5g41760.1 68418.m05084 nucleotide-sugar transporter family
protein low similarity to SP|Q61420 CMP-sialic acid
transporter {Mus musculus}; contains Pfam profile
PF04142: Nucleotide-sugar transporter
Length = 340
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 771 TSAKGLLTTXTQATPRANAGYRLVPFLVEL 682
TS++G+LTT +Q+ Y VPFL E+
Sbjct: 17 TSSQGILTTLSQSDGGYKYDYATVPFLAEV 46
>At5g47920.1 68418.m05919 expressed protein similar to unknown
protein (emb|CAB67623.1)
Length = 187
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Frame = -2
Query: 391 HHL--HNDDHQQKDCVRDDHAVTLAYRSTASQERDHEHYSPDDYE-DPRPTAR 242
HHL H D D +D + + Y S AS HE Y + E D P R
Sbjct: 58 HHLLGHADQDDDNDQDQDKNKAIVLYNSKASTMAHHEEYDVHEEESDKYPDLR 110
>At1g59550.1 68414.m06696 UBX domain-containing protein contains
Pfam profile PF00789: UBX domain
Length = 307
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -3
Query: 696 FLVELAESWDRSPG-FAASTVQLLPAKVERMLFLTQQDSGNVNWP*LIAPSVTAAFE 529
FL +L + D SP AST + + K E++ QQD GN++ ++ S F+
Sbjct: 136 FLKDLKKYIDASPHEHIASTARNMRVKAEKICHSDQQDMGNLSSDSVVVSSCGREFD 192
>At1g55600.1 68414.m06364 WRKY family transcription factor similar
to SPF1 protein GI:484261 from [Ipomoea batatas];
contains Pfam profile: PF03106 WRKY DNA -binding domain
Length = 485
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = -2
Query: 454 ADAIHNALLDALAVGEEEDADHHLHNDDH--QQKDCVRDDHAVTLAYRSTASQERDHEHY 281
++ + +A D +++ + E D + +DD Q +D D + +E+D ++
Sbjct: 204 SELVDDAHTDIISIEDSESEDGNKDDDDEDFQYEDEDEDQYDQDQDVDEDEEEEKDEDNV 263
Query: 280 SPDDYEDPRPTAR 242
+ DD + P P R
Sbjct: 264 ALDDPQPPPPKRR 276
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,600,505
Number of Sequences: 28952
Number of extensions: 311921
Number of successful extensions: 1036
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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