Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0733
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.55 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.3  
SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein S30|S...    26   5.1  
SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein S30|Schizosa...    26   5.1  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    26   6.7  
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    25   8.9  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = +3

Query: 585 GFTSSLFSCASTFTTSWFNHP--FLPATAGFGRLDFLTLASSVLAGLWQNCWQPSGGSGG 758
           G  S L S     T + ++ P    P  AG G L    LAS  L  L+ +     GG GG
Sbjct: 133 GLFSGLTSSNGYTTGNSYSRPSYVAPVAAGLGGLALGGLASHALGNLFHHRGHNGGGFGG 192

Query: 759 F 761
           F
Sbjct: 193 F 193


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -3

Query: 757 PPDPPDGCQQFCHKPANTEEANVRKSSRPNPAVAGR-KG*LNQEVVKVEAQEKSE 596
           PP PP G +     P       V+K     PA +G  +  LN+   K  A +KS+
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQSGNLEKQLNERARKWRASQKSK 65


>SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 61

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -3

Query: 652 RKG*LNQEVVKVEAQEKSEEVKPRRCKRIRHSESGRNTTICGRHTTRRNKST 497
           R G +  +  KVE QEK ++ K R  KR+ +     N T       R N S+
Sbjct: 10  RAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61


>SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 61

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -3

Query: 652 RKG*LNQEVVKVEAQEKSEEVKPRRCKRIRHSESGRNTTICGRHTTRRNKST 497
           R G +  +  KVE QEK ++ K R  KR+ +     N T       R N S+
Sbjct: 10  RAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 588 FTSSLFSCASTFTTSWFNHPFLPATAGFGRLDFLTLAS 701
           F  SLF    ++  SWF +P L A    G L + ++ S
Sbjct: 67  FIPSLFIAVLSYIPSWFVNPLLAARWTIGYLSWESMNS 104


>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 494 SSRFVSSGRVSAADGCVSAGFT 559
           S +F+S+   +AA+G VSA FT
Sbjct: 335 SPKFISARAAAAAEGVVSAPFT 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,789,292
Number of Sequences: 5004
Number of extensions: 50425
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)