Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0733
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1477| Best HMM Match : RVT_1 (HMM E-Value=0.00065)                  28   9.5  

>SB_1477| Best HMM Match : RVT_1 (HMM E-Value=0.00065)
          Length = 325

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 557 TVPDAFASSGLYFFTFLLRLNFYNFLV*SSFS--TGYSWI 670
           TV D F  +G YFFTF L+  +++  + S      G+SWI
Sbjct: 193 TVFDLF-QAGYYFFTFDLKSGYHHLEIFSDHRKYLGFSWI 231


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,252,010
Number of Sequences: 59808
Number of extensions: 393520
Number of successful extensions: 1213
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)