Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0733
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY255667-1|AAQ96604.1|  159|Caenorhabditis elegans MiRP4 protein.      29   4.8  
AY255666-1|AAQ96603.1|  164|Caenorhabditis elegans MPS-3 protein.      29   4.8  
AF099925-6|AAC69501.1|  159|Caenorhabditis elegans Mirp k channe...    29   4.8  
AF099925-5|AAZ94292.1|  164|Caenorhabditis elegans Mirp k channe...    29   4.8  
AF099925-7|AAO38626.1|  115|Caenorhabditis elegans Mirp k channe...    28   6.3  
Z74041-5|CAA98516.2|  354|Caenorhabditis elegans Hypothetical pr...    28   8.3  
U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>AY255667-1|AAQ96604.1|  159|Caenorhabditis elegans MiRP4 protein.
          Length = 159

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -2

Query: 155 IIRFYFILMQMCKAIYVVLDLKMVSC*VLNNI*FIEIIITDNTIF 21
           +  FYF+L+Q  KA   VL    + C V+  I F+ I+I   +IF
Sbjct: 43  VAMFYFLLVQWSKADNPVLTHFQIFCLVIIGIGFLIILILIFSIF 87


>AY255666-1|AAQ96603.1|  164|Caenorhabditis elegans MPS-3 protein.
          Length = 164

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -2

Query: 155 IIRFYFILMQMCKAIYVVLDLKMVSC*VLNNI*FIEIIITDNTIF 21
           +  FYF+L+Q  KA   VL    + C V+  I F+ I+I   +IF
Sbjct: 48  VAMFYFLLVQWSKADNPVLTHFQIFCLVIIGIGFLIILILIFSIF 92


>AF099925-6|AAC69501.1|  159|Caenorhabditis elegans Mirp k channel
           accessory subunitprotein 2, isoform a protein.
          Length = 159

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -2

Query: 155 IIRFYFILMQMCKAIYVVLDLKMVSC*VLNNI*FIEIIITDNTIF 21
           +  FYF+L+Q  KA   VL    + C V+  I F+ I+I   +IF
Sbjct: 43  VAMFYFLLVQWSKADNPVLTHFQIFCLVIIGIGFLIILILIFSIF 87


>AF099925-5|AAZ94292.1|  164|Caenorhabditis elegans Mirp k channel
           accessory subunitprotein 2, isoform d protein.
          Length = 164

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -2

Query: 155 IIRFYFILMQMCKAIYVVLDLKMVSC*VLNNI*FIEIIITDNTIF 21
           +  FYF+L+Q  KA   VL    + C V+  I F+ I+I   +IF
Sbjct: 48  VAMFYFLLVQWSKADNPVLTHFQIFCLVIIGIGFLIILILIFSIF 92


>AF099925-7|AAO38626.1|  115|Caenorhabditis elegans Mirp k channel
           accessory subunitprotein 2, isoform c protein.
          Length = 115

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -2

Query: 146 FYFILMQMCKAIYVVLDLKMVSC*VLNNI*FIEIIITDNTIF 21
           FYF+L+Q  KA   VL    + C V+  I F+ I+I   +IF
Sbjct: 2   FYFLLVQWSKADNPVLTHFQIFCLVIIGIGFLIILILIFSIF 43


>Z74041-5|CAA98516.2|  354|Caenorhabditis elegans Hypothetical
           protein T03F7.2 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +3

Query: 546 LPDSLCRMRLHLLGFTSSLFSCASTFTTSWFNHPFLPATAGF--GRLDFLTLASSVLAGL 719
           LP   C + LHLL   SSL  C    T     + F+PA AGF  G L +L +++ +   +
Sbjct: 65  LPIKWCMLYLHLLATFSSL--C---LTGVMMPYVFIPACAGFTVGLLPYLGVSTQLQGYI 119

Query: 720 WQNC 731
              C
Sbjct: 120 GIGC 123


>U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical
           protein T04G9.1 protein.
          Length = 1610

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = -3

Query: 715 PANTEEANVRKSSRPNPAVAGRKG*LNQEVVKVEAQEKSEEVKPRRCKRIR-HSESGRNT 539
           P+  EE   R SS    + +      ++++VKVEA E +    P +  R R   +  +  
Sbjct: 514 PSEKEEEQSRSSSNIVHSASQENTKFDEDIVKVEAPEHNHTPPPVKKTRGRPRKDRSQEP 573

Query: 538 TICGRHTTRRNK 503
           T   +H  R  K
Sbjct: 574 TAVPKHMQRMRK 585


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,739,759
Number of Sequences: 27780
Number of extensions: 302054
Number of successful extensions: 835
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)