Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0733
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   7.1  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.4  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 659 YSWIRPAGFSNISLFGVGRFVAELLAAVW 745
           YSW      S++   G GRF  + L  +W
Sbjct: 326 YSWALFKAMSHMLCIGYGRFPPQSLTDMW 354



 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 155 IIRFYFILMQMCKAIYVVLDLKMVSC*VLNNI*FIEII 42
           ++ F   +MQ   A  V+LD K+++   L    F+++I
Sbjct: 137 VVNFRTGIMQQDNAEQVILDPKLIAKHYLRTWFFLDLI 174


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 659 YSWIRPAGFSNISLFGVGRFVAELLAAVW 745
           YSW      S++   G GRF  + L  +W
Sbjct: 294 YSWALFKAMSHMLCIGYGRFPPQSLTDMW 322



 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 155 IIRFYFILMQMCKAIYVVLDLKMVSC*VLNNI*FIEII 42
           ++ F   +MQ   A  V+LD K+++   L    F+++I
Sbjct: 137 VVNFRTGIMQQDNAEQVILDPKLIAKHYLRTWFFLDLI 174


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/43 (27%), Positives = 16/43 (37%)
 Frame = +3

Query: 483 SASPPVDLFLRVVCRPQMVVFLPDSLCRMRLHLLGFTSSLFSC 611
           S   PVD    +VC P + VF   + C     L       + C
Sbjct: 23  STVEPVDPVKSLVCSPDLSVFTSPA-CGSETPLTNIEEKTYQC 64


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 155 IIRFYFILMQMCKAIYVVLDLKMVSC*VLNNI*FIEII 42
           ++ F   +MQ   A  V+LD K+++   L    F+++I
Sbjct: 137 VVNFRTGIMQQDNAEQVILDPKLIAKHYLRTWFFLDLI 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,557
Number of Sequences: 438
Number of extensions: 3271
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)