Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0733
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11385.1 68416.m01386 DC1 domain-containing protein contains ...    33   0.27 
At1g16370.1 68414.m01958 transporter-related low similarity to o...    32   0.48 
At3g54350.2 68416.m06007 forkhead-associated domain-containing p...    29   4.5  
At3g54350.1 68416.m06006 forkhead-associated domain-containing p...    29   4.5  
At1g77270.1 68414.m08999 expressed protein                             28   7.8  

>At3g11385.1 68416.m01386 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 766

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = -3

Query: 757 PPDPP---DGCQQFCHKPANTEEANVRKSSRPNPAVAGRKG*LNQEVVKVEAQEKSEEVK 587
           PP PP    GC+  C    N E+ +      P P   G +   NQ   K + +E S+   
Sbjct: 38  PPQPPLGYKGCRNQCSAKMNKEKVS------PPPTPLGFRRHHNQNSAKKDQEEVSQVPL 91

Query: 586 PRRCKRIRHSESG 548
           P  C+R  H+++G
Sbjct: 92  PLECRRY-HNQTG 103


>At1g16370.1 68414.m01958 transporter-related low similarity to
           organic cation transporter OCTN1 from [Homo sapiens]
           GI:2605501, [Mus musculus] GI:4126605, [Rattus
           norvegicus] GI:5679326; contains Pfam profile PF00083:
           major facilitator superfamily protein
          Length = 521

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
 Frame = +3

Query: 456 GVDFLSSFFSASPPVDLFLRVVCRPQMVVFLPD-SLCRMRLHLLG-FTSSLFSCASTFTT 629
           G++  SS     P    ++  +     +  +PD SL R +L L   F  S+ S +  F+T
Sbjct: 114 GLECSSSLLRGMPSSAFYIGAIVGGFFLALIPDDSLGRKKLVLFSTFAMSITSISVIFST 173

Query: 630 SWFNHPFLPATAGFGRLDFLTLASSVLAGLWQNCWQP 740
           + + + FL    GF R    + A  +++      W+P
Sbjct: 174 NVWIYTFLKFIIGFSRSQTWSYALVLISERVSTRWRP 210


>At3g54350.2 68416.m06007 forkhead-associated domain-containing
           protein / FHA domain-containing protein MSP58 -
           nucleolar protein, Mus musculus, EMBL:AF015309
          Length = 702

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -1

Query: 588 SPEDANASGTVNPAETQPSAADTRPEETNL 499
           S  D N     NP E +PS A T P E  L
Sbjct: 267 STNDTNREAFPNPTEQEPSIAPTHPGEATL 296


>At3g54350.1 68416.m06006 forkhead-associated domain-containing
           protein / FHA domain-containing protein MSP58 -
           nucleolar protein, Mus musculus, EMBL:AF015309
          Length = 702

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -1

Query: 588 SPEDANASGTVNPAETQPSAADTRPEETNL 499
           S  D N     NP E +PS A T P E  L
Sbjct: 267 STNDTNREAFPNPTEQEPSIAPTHPGEATL 296


>At1g77270.1 68414.m08999 expressed protein
          Length = 682

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/45 (33%), Positives = 31/45 (68%)
 Frame = -3

Query: 712 ANTEEANVRKSSRPNPAVAGRKG*LNQEVVKVEAQEKSEEVKPRR 578
           A+ ++A  +K+ + + AVA  K  LN+E++++E+   ++EV PR+
Sbjct: 75  ASKDDALAKKNPKKS-AVA--KTILNKEIIEIESDTDTDEVGPRK 116


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,741,833
Number of Sequences: 28952
Number of extensions: 272690
Number of successful extensions: 774
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)