Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0729
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    28   1.8  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    27   4.1  
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    26   5.5  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    26   7.2  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    26   7.2  

>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 272 YHHPAYFCREAVMRFGLKGGAAVVTILKTLELVSQGG 382
           +  P+ F  E V+   L GG AVV +  TLE + Q G
Sbjct: 87  FKKPSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSG 121


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 642 YPIEIIHSDIKYNAGRLLDNTHKLVIPSHNGTEFSTKTQSY 520
           Y I  I +   Y A  + +NTH+  +P  NGT  ++  Q Y
Sbjct: 128 YDILTIGNHELYQAA-ISNNTHEYFVPHWNGTYLASNVQIY 167


>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = +1

Query: 136 VHNDSLLQKRTTGSEHRCIATYECTMSYPLGHDYFKTTTWSPRGWVPP 279
           ++ DS       G +     T E   ++P  +  +  T+WS  G+V P
Sbjct: 581 IYQDSSDSSSVLGCDPEGFPTTEYIANHPKAYLNYNATSWSEAGYVRP 628


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 612 KYNAGRLLDNTHKLVIPSHNGTEFSTKTQSY 520
           K+    +LD+ + +V+PS  G++ +TK  S+
Sbjct: 581 KFEMLDMLDSGYPVVVPSLTGSDVNTKDSSF 611


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 457 GGRAHSPSGVKWLLEPIDIHN 395
           GG  H P+ V WLL P DI++
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,416,584
Number of Sequences: 5004
Number of extensions: 72400
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)