Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0729
         (806 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)               28   7.7  
SB_18584| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
          Length = 872

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 368 QVLRS*V*LQRLPHPSSRNALLLHGRNRQ 282
           Q LR    +QR P P+ RN++ LHG   Q
Sbjct: 22  QALRQQNQVQRRPEPTPRNSIFLHGLRAQ 50


>SB_18584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1022

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 223 LGHDYFKTTTWSPRGWVPP 279
           LG  Y K  TW   GW+PP
Sbjct: 58  LGRCYHKHNTWPILGWIPP 76


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,284,361
Number of Sequences: 59808
Number of extensions: 585449
Number of successful extensions: 1021
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)