Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0729
         (806 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006615-4|AAK68233.2|  602|Caenorhabditis elegans Hypothetical ...    29   3.9  
U50068-2|AAD47116.3|  426|Caenorhabditis elegans Hypothetical pr...    28   9.0  

>AC006615-4|AAK68233.2|  602|Caenorhabditis elegans Hypothetical
           protein C36B7.6 protein.
          Length = 602

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 599 PALYFISEWIISIGYIPTHATQKVWRLSLSXWIFSHYSY 715
           P L+F + W +   Y+P + T K  +LS++ +  S + Y
Sbjct: 251 PILFFNNYWNLGADYMPINETVKELKLSVTFYPLSIFKY 289


>U50068-2|AAD47116.3|  426|Caenorhabditis elegans Hypothetical
           protein C01G5.9 protein.
          Length = 426

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 22/94 (23%), Positives = 37/94 (39%)
 Frame = +1

Query: 130 NFVHNDSLLQKRTTGSEHRCIATYECTMSYPLGHDYFKTTTWSPRGWVPPPCLFLP*SSN 309
           +F  N S L+    G+E +C+  + C     L    F+T  +S   WV    L       
Sbjct: 224 DFYRNSSNLEVIQMGNETKCLNRHRCRHEMQLQDCVFRTQKYS--SWVATVDL----DER 277

Query: 310 AFRLEGWGSRCNYT*DLRTCISRWVAHLRCGCLW 411
              ++   +  +Y   +R C    ++ LR  C W
Sbjct: 278 IMMIDEKSTLLDY---IRNCNDHKISELRFRCQW 308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,162,903
Number of Sequences: 27780
Number of extensions: 420100
Number of successful extensions: 817
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)