Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0729
         (806 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    26   0.36 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           26   0.36 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   3.3  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    23   4.4  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   4.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   4.4  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 231 RLLQNYYVESARVGTTTL 284
           RL++NYY ES ++  TTL
Sbjct: 388 RLIRNYYFESNKIDETTL 405


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 231 RLLQNYYVESARVGTTTL 284
           RL++NYY ES ++  TTL
Sbjct: 388 RLIRNYYFESNKIDETTL 405


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 165 ALLQKTIVVNEILPKIQLIALEQPPYSSDR 76
           ALL  T+ V +++  +  + +  PPYS  R
Sbjct: 137 ALLAFTLGVKQLIVGVNKMDMTDPPYSEAR 166


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 165 ALLQKTIVVNEILPKIQLIALEQPPYSSDR 76
           ALL  T+ V +++  +  +   +PPYS  R
Sbjct: 64  ALLAFTLGVKQLIVGVNKMDSTEPPYSETR 93


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 165 ALLQKTIVVNEILPKIQLIALEQPPYSSDR 76
           ALL  T+ V +++  +  +   +PPYS  R
Sbjct: 80  ALLAFTLGVKQLIVGVNKMDSTEPPYSETR 109


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 165 ALLQKTIVVNEILPKIQLIALEQPPYSSDR 76
           ALL  T+ V +++  +  +   +PPYS  R
Sbjct: 137 ALLAFTLGVKQLIVGVNKMDSTEPPYSETR 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,917
Number of Sequences: 438
Number of extensions: 5326
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)