Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0727
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.30
SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces pombe... 29 0.93
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 27 2.8
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 26 5.0
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 26 5.0
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 26 6.6
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc... 25 8.7
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 25 8.7
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 8.7
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 25 8.7
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 8.7
>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 457
Score = 30.3 bits (65), Expect = 0.30
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 324 EEDEYQYTACKAFKQLLQELGDFAGQREVVAEN--LQSNVVRELHLLAKELREERKQH 491
E D Y Y A + L+ G F V E L ++++ + H L +ELR+E+ QH
Sbjct: 385 ERDLYPYQMKLASLENLRVNGKFLASDHSVPEGQELVNSLLTQCHQLIEELRDEKHQH 442
>SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 104
Score = 28.7 bits (61), Expect = 0.93
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 399 QREVVAENLQSNVVRELHLLAKELREERKQ-HLNEGA 506
+++V+ EN + + E L + L++ERK+ H NEGA
Sbjct: 63 RKKVIEENRKKEEIEERILTDRILQQERKKSHANEGA 99
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -1
Query: 490 CCFLSSRNSLASRCNSRTTFD*RFSATTSRCPAKSPNSCSNCLNALH 350
CC SSR++ SR N T +R P CS+ +NA H
Sbjct: 448 CCLASSRSTSISRKNRYTDI---VPYDKTRVRLAVPKGCSDYINASH 491
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/52 (30%), Positives = 20/52 (38%)
Frame = +3
Query: 312 PKRKEEDEYQYTACKAFKQLLQELGDFAGQREVVAENLQSNVVRELHLLAKE 467
P R + +Q K L Q L DF G E + S RE L+ E
Sbjct: 258 PNRMDFSRFQIERLKERNDLTQRLMDFTGMNEFGPSRVVSEKNREYILVKNE 309
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 26.2 bits (55), Expect = 5.0
Identities = 21/74 (28%), Positives = 32/74 (43%)
Frame = +1
Query: 187 NLAAHTHKGIEFLDKYGNFVKESAL*NWNMQENSGGLSKIINQKGKKKMNTSIQHVKHLN 366
NLA GI+ + + + L N N + L K + +GK T++ V ++
Sbjct: 585 NLALRIFSGIQKPNVVHYSIAATVLGNLNQLDQLLLLEKRMESEGKAP--TALSLVAFVS 642
Query: 367 SYCKS*AISQDNGK 408
SYCK A D K
Sbjct: 643 SYCKQGAEGLDEAK 656
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 336 YQYTACKAFKQLLQELGDFAGQREVVAENLQSNVVREL 449
Y + +AFK ++ G ++G V ENL+ ++V L
Sbjct: 116 YHPSPFQAFKHIIDNGGKYSGLDRVFLENLRKSLVVSL 153
>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/47 (21%), Positives = 25/47 (53%)
Frame = +3
Query: 279 GKLRRLVKNYQPKRKEEDEYQYTACKAFKQLLQELGDFAGQREVVAE 419
GKL++++K + K++++ ++ +G F ++E +AE
Sbjct: 282 GKLKKILKMLEKDSKKDEKTKFEESDICISQCSSMGSFGPKQEYIAE 328
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +3
Query: 573 RRESRKEHS--RPSKRQTLT-SNLSRAELEKPKSDLKLQESXRXK 698
+RE RK+HS + SK++T T S L +LEK K + + K
Sbjct: 164 KREKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKKEHKKKDK 208
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +3
Query: 240 LCQGECAIELEYAGKLRRLVKNYQPKRKEEDEYQYTACKAFKQLLQELGDF 392
+CQ E ++L+ ++ L++ R+ EY + + A+K+L ++ G F
Sbjct: 199 VCQREAKVQLQCFNEV--LLQAEHGLRQSSVEYLHGSLLAYKELFEKSGSF 247
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 579 ESRKEHSRPSKRQTLTSNLSRAELEKPKSDLKLQE 683
E+ ++ + + L +LSR LE K++LKL E
Sbjct: 3 ENAGNETKLVENENLQEDLSRLNLEDEKNELKLNE 37
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/34 (26%), Positives = 17/34 (50%)
Frame = +1
Query: 463 KNCERKESNI*TKEQTNGSSEHFDRFTGTSQASV 564
KN + + ++E + SEHFD + G + +
Sbjct: 70 KNAQEVAGKLLSEENEDSISEHFDEYLGADKPGI 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,923,558
Number of Sequences: 5004
Number of extensions: 60163
Number of successful extensions: 203
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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