Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0727
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,965...    30   2.2  
06_01_0768 + 5742938-5743196,5743291-5744729                           29   3.0  
01_05_0050 + 17579872-17580103,17580206-17580262,17581178-175814...    29   3.0  
11_04_0375 + 16933688-16933703,16936291-16937063                       29   3.9  
09_04_0371 - 17020539-17020607,17020697-17020747,17020888-170210...    29   3.9  
08_01_0648 + 5602454-5602513,5602913-5603000,5603128-5604248,560...    28   6.9  
03_02_0804 + 11374219-11374221,11374326-11374473,11374556-113746...    28   6.9  
10_06_0186 + 11595041-11595182,11596442-11596473,11596628-115967...    28   9.1  

>03_02_0584 -
           9650996-9651488,9651630-9652049,9652129-9652158,
           9652201-9652287,9652657-9653669,9653832-9654854,
           9654946-9654969
          Length = 1029

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +3

Query: 486 QHLNEGANKWEF*TLR*VHWNEPGERTNVRRESRKEHSRPSKRQTLTSNLSRAELEKP 659
           +H+NE  N      +R     EP E++    ++  E  +P + Q++    +RAE+EKP
Sbjct: 330 KHINESENNAPNVAVRSEPTKEPEEQSQRHVQNDVEKEQPLESQSVGLANNRAEIEKP 387


>06_01_0768 + 5742938-5743196,5743291-5744729
          Length = 565

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
 Frame = +3

Query: 360 FKQLLQELGDFAGQREVVAENLQSNVVRELHLLAKELREERKQHLNEGANKWEF*TLR*V 539
           FK +L ++     Q  ++ E ++          A       K  L  G N W +  +R  
Sbjct: 374 FKHILDQITACTSQERLLPEVVEQEPSSFPAPAAAATAARSKAVLMTGLNSWYYDNIRSR 433

Query: 540 HWNEP---GERTNVRRESRKEH 596
           +W  P   GE   V + S +EH
Sbjct: 434 YWQSPTATGEVVRVHQPSHEEH 455


>01_05_0050 +
           17579872-17580103,17580206-17580262,17581178-17581413,
           17581509-17581637,17581752-17581811,17582088-17582158,
           17582568-17582673,17582753-17582791
          Length = 309

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +3

Query: 558 ERTNVRRESRKEHSRPSKRQTLTSNLSRAELEKPKS 665
           +R N RR+ R ++    K++ LTS+  + ++EK KS
Sbjct: 230 QRQNRRRKKRSQNHVEKKQKPLTSDKKKRKIEKKKS 265


>11_04_0375 + 16933688-16933703,16936291-16937063
          Length = 262

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 413 RGKSSIKCSPRVAPARQRIARGKKAT 490
           +GK+SIK +P +  A QR++R KK +
Sbjct: 229 KGKNSIKGNPLIRIASQRVSRSKKGS 254


>09_04_0371 -
           17020539-17020607,17020697-17020747,17020888-17021058,
           17023296-17023404,17023570-17023676,17024429-17024640,
           17024805-17024952
          Length = 288

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +3

Query: 525 TLR*VHWNEPGERT-NVRR---ESRKEHSRPSKRQTLTSNLSRAELEKPKSDL 671
           TL+ VHW+EP E T N  R   E    H  PS  + + S L   +  +P + L
Sbjct: 138 TLKQVHWHEPSEHTINGTRFDAEMHMVHEDPSMARAVVSVLLSTKAGQPNAVL 190


>08_01_0648 +
           5602454-5602513,5602913-5603000,5603128-5604248,
           5605146-5605217,5605218-5605373,5605458-5605748
          Length = 595

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +1

Query: 148 KMSWGVELWDQYDNLAAHTHKGIEFLDKYGNFVKESAL*NWNMQENSGGLSKIINQKGK 324
           +M W  E  D Y N+     + +E    + N +K  +L  W M  +   LS I+ +  K
Sbjct: 432 EMFWATESLDMYGNVQVLLRRQLENFPMFNN-LKTLSLGEWCMVPDFSALSTILKKSPK 489


>03_02_0804 +
           11374219-11374221,11374326-11374473,11374556-11374629,
           11374736-11375233,11375749-11376093,11376178-11376390,
           11376669-11377457,11377686-11377769
          Length = 717

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +1

Query: 397 DNGKLSRKIFNQM*SESCTCS--PKNCERKESNI*TKEQTNGSSE 525
           + G L  ++ +Q  SE C+CS  P+N ERK  ++    + NG S+
Sbjct: 556 NQGSLDARVDHQ--SEHCSCSNPPENGERKPDSLSELVKLNGKSQ 598


>10_06_0186 +
           11595041-11595182,11596442-11596473,11596628-11596722,
           11596841-11596925
          Length = 117

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 424 RFSATTSR-CPAKSPNSCSNCLNALHAVYWY 335
           RFS T SR C A S    +N  N + +VYW+
Sbjct: 25  RFSGTISRRCDAVSAVGGANSGNGIESVYWW 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,600,710
Number of Sequences: 37544
Number of extensions: 370408
Number of successful extensions: 958
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)