Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0727
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34921| Best HMM Match : No HMM Matches (HMM E-Value=.)              89   5e-18
SB_128| Best HMM Match : SH3BP5 (HMM E-Value=3.3)                      69   4e-12
SB_10519| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.75 
SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05)                   31   0.99 
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)                   30   1.7  
SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)               29   3.0  
SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)                  29   3.0  
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)        29   4.0  
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_771| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.27)             28   7.0  
SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_34921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 38/90 (42%), Positives = 61/90 (67%)
 Frame = +3

Query: 231 IWKLCQGECAIELEYAGKLRRLVKNYQPKRKEEDEYQYTACKAFKQLLQELGDFAGQREV 410
           I +  +  C IE EYA +LR+L K++  K+K EDE QY++ KAF  +++E  D AGQ E+
Sbjct: 28  ISRFAKERCRIEAEYAKELRKLAKSFHTKKKHEDELQYSSHKAFSDVVKETDDKAGQHEL 87

Query: 411 VAENLQSNVVRELHLLAKELREERKQHLNE 500
           +AEN+ + + +ELH L  EL  E+++H ++
Sbjct: 88  IAENMSAEIYKELHKLHSELEHEKRKHCSD 117



 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 25/70 (35%), Positives = 38/70 (54%)
 Frame = +1

Query: 151 MSWGVELWDQYDNLAAHTHKGIEFLDKYGNFVKESAL*NWNMQENSGGLSKIINQKGKKK 330
           MSWGV+LWDQ+D +AAH+ +GI+ + +   F KE         +    L+K  +   KKK
Sbjct: 1   MSWGVDLWDQFDLVAAHSERGIDLVKRISRFAKERCRIEAEYAKELRKLAKSFHT--KKK 58

Query: 331 MNTSIQHVKH 360
               +Q+  H
Sbjct: 59  HEDELQYSSH 68


>SB_128| Best HMM Match : SH3BP5 (HMM E-Value=3.3)
          Length = 410

 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 9/150 (6%)
 Frame = +3

Query: 291 RLVKNYQPKRKEEDEYQYTACKAFKQLLQELGDFAGQREVVAENLQSNVVRELHLLAKEL 470
           +L KN+QPK+K E+E ++T  K F  +++E  D AGQ E++ ENL S+V++EL  L  EL
Sbjct: 2   KLAKNFQPKKKAEEELKFTFHKGFFDVVKETDDIAGQHELIVENLNSSVLKELQDLHSEL 61

Query: 471 REERKQHLNEGANKWE---F*TLR*VHWNEPGERTNVRRESRKEHSRPSKRQTLTS---- 629
           + +RK+   +     E      L  +   E     N+  +   E ++    Q L +    
Sbjct: 62  KTDRKKPAQQAFVDIEQDATCLLPVLIKQEGNYLININSKKAYEKAKSEAEQALAAFQRA 121

Query: 630 --NLSRAELEKPKSDLKLQESXRXKIXKPG 713
             ++S  +L+  K  L L E  R  +  PG
Sbjct: 122 DQDMSMTKLQVEKDSLLLIEQNRTALQPPG 151


>SB_10519| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 873

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
 Frame = +3

Query: 243 CQGECAIELEYAGKLRRLVKNYQP---KRKEEDEYQYTACKAFKQLLQELGDFAGQREVV 413
           C+    +E EY+  L RL   +     K K + + + T    + +LL E  + A QR+  
Sbjct: 50  CKKMSEVETEYSKNLDRLSDRFLDRLQKFKAQRKERSTTMDVWHKLLVETKNRAKQRQSF 109

Query: 414 AENLQSNVVRELHLLAKELREERKQHLNE 500
           ++NL +N+      ++ + +   K+ L +
Sbjct: 110 SDNLANNIANRFMSMSDDYQRISKKKLRK 138


>SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05)
          Length = 509

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 21/69 (30%), Positives = 35/69 (50%)
 Frame = +3

Query: 240 LCQGECAIELEYAGKLRRLVKNYQPKRKEEDEYQYTACKAFKQLLQELGDFAGQREVVAE 419
           LC G+C+  L+   K + LV +  P  +E +E+Q TAC    Q     G+FA     +  
Sbjct: 109 LCSGDCSASLDVHIKDQLLVSHGAPLYEENNEHQ-TACDCAMQ-----GNFAEIAAFLES 162

Query: 420 NLQSNVVRE 446
            +  +V++E
Sbjct: 163 KMVFSVIKE 171


>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
          Length = 1249

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
 Frame = +3

Query: 252 ECAIE----LEYAGKLRRLVKNYQPKRKEEDEYQYTACKAFKQLLQELGDFAGQREVVAE 419
           ECAI+    LE   K ++L +  +   + + E +    +  ++L ++  +   QRE    
Sbjct: 550 ECAIKPLNLLEARIKAQKLEEEQRELERLQAEAELKRKQELERLREKRKEEKAQRERELI 609

Query: 420 NLQSNVVRELHLLAKELREERKQHLNEGANKWE 518
             + N  RE+++  K +RE+ KQ   E   K E
Sbjct: 610 EQEKNRAREIYISLKRVREQVKQKEAEEQRKLE 642


>SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)
          Length = 1290

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 27/101 (26%), Positives = 44/101 (43%)
 Frame = +3

Query: 312  PKRKEEDEYQYTACKAFKQLLQELGDFAGQREVVAENLQSNVVRELHLLAKELREERKQH 491
            P +KE +E +  + KA    LQE       R   A     N +  L    KEL+EE K  
Sbjct: 891  PDKKEREEIE--SLKAQLSELQEEMKRRDSRWSAASARYRNRIEALEEQNKELQEEVKLL 948

Query: 492  LNEGANKWEF*TLR*VHWNEPGERTNVRRESRKEHSRPSKR 614
                 + W     +  +    G+ T  R+E +++ +RPS++
Sbjct: 949  EKYRLDLWRTEQDKAGNDENSGKETRPRKEKQRKTARPSEQ 989


>SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)
          Length = 603

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
 Frame = +3

Query: 546 NEPGERTNVRRESRKEHSRPSKRQTLTSN-LSRA-ELEKPKSDLKLQESXRXKI 701
           N    +  ++++ +K+H RPS+ +T T N  SRA + ++ + ++K+Q+  +  I
Sbjct: 227 NTQQRQQRLQQQLQKQHQRPSQHKTQTQNKQSRASKKQQQQQEMKIQQQQQQYI 280


>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
          Length = 1709

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 31/141 (21%), Positives = 60/141 (42%)
 Frame = +3

Query: 261 IELEYAGKLRRLVKNYQPKRKEEDEYQYTACKAFKQLLQELGDFAGQREVVAENLQSNVV 440
           I+ E+  K+  L +    +R +  +Y+        Q+     +   + + + + L+    
Sbjct: 499 IKEEFQSKVESLEQELSAERAKVADYEAKLGDVEMQVQAFKAEKEKEVKFIEDELKKQCK 558

Query: 441 RELHLLAKELREERKQHLNEGANKWEF*TLR*VHWNEPGERTNVRRESRKEHSRPSKRQT 620
             +   AKEL+E+ +  LNE  NK E  TLR     +  E   V+  S  E +  + ++ 
Sbjct: 559 ALVEKKAKELKEKYQGELNEKVNKVER-TLR-----KQYEEDIVKGRSELEETNRTLKEK 612

Query: 621 LTSNLSRAELEKPKSDLKLQE 683
             S +S   L+  +   + QE
Sbjct: 613 YESEVSEIMLQMEQVQQRNQE 633


>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1507

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 6/153 (3%)
 Frame = +3

Query: 246  QGECAIELEYAGKLRRLVKNYQPKRKEEDEYQYTACKAFKQLLQELGDFAG----QREVV 413
            + EC I  +   + RRL         +ED ++    KAF + LQ+  D       Q+   
Sbjct: 614  KAECEILQDEVAQYRRL--------SDEDRHRLDEYKAFAKQLQDNLDKISLEKLQQSQE 665

Query: 414  AENLQSNVVRELHLLAKELREERKQHLNE-GANKWEF*TLR*VHWNEPGERTNVRRESRK 590
                 S++V++LH   KE  +ERK+  +E  A + E   ++    NE    T    +++K
Sbjct: 666  HSKKISDLVKQLHSFNKEKEKERKKWKDELTAREKEITEIK--KMNE--TLTQQENDNKK 721

Query: 591  E-HSRPSKRQTLTSNLSRAELEKPKSDLKLQES 686
            + ++      TL  +  R ELE  K  + ++E+
Sbjct: 722  KINNLDGLIGTLNEDKKRLELENQKLRVDVEEA 754


>SB_771| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.27)
          Length = 506

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +3

Query: 207 QRNRVFR*IWKLCQGECAIELEYAGKLRRLVKNYQPKRKEEDEY-QYTACKAFKQLLQEL 383
           Q NRV +     C+  C    E    LR+   + Q K ++E+E+   T  K  + L +E 
Sbjct: 41  QENRVLKMELDTCRLRCKSLQEENRALRQASVSIQAKAEQEEEFISNTLLKKIQSLKKEK 100

Query: 384 GDFAGQREVVAENLQSNVVREL 449
              A   E   E L +++ R+L
Sbjct: 101 ETLAMNYEQEEEFLTNDLSRKL 122


>SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +3

Query: 294 LVKNYQPKRKEEDEYQYTACKAFKQLLQELGDFAGQREVVAENLQSNVVRELHLLAKELR 473
           L  N      +  + + T C+ FK+ LQ +    G    + ++ Q NVV    L++KE  
Sbjct: 677 LANNLNSILADLQQCEATECQQFKEYLQSV----GYDPAMLDDEQVNVVTLRRLISKEWL 732

Query: 474 EERKQH 491
           E R+++
Sbjct: 733 ENRERY 738


>SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 136 FAATKMSWGVELWDQYDNLAAHTHKGIEFLDKYGNFVK 249
           F+   + W +  WD + N+A H++ G+  +DK+ N  K
Sbjct: 187 FSGDPLEW-MTFWDSF-NVAVHSNPGLPDVDKFLNLGK 222


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,612,753
Number of Sequences: 59808
Number of extensions: 446103
Number of successful extensions: 1398
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1393
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)