Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0727
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.25 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   1.00 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   1.00 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.0  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   7.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.0  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   9.3  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 9/46 (19%), Positives = 28/46 (60%)
 Frame = -2

Query: 138  KITSHTPKNTLKLH*HTIVVNTKNYRTNSTNNIFLITTTISKHIPP 1
            ++++     T++L  H+++ + ++   +S +N+  +TT ++  +PP
Sbjct: 924  QVSTSAGLQTIRLSGHSVLHSAQSVVASSASNVTNVTTNLTTILPP 969


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 1.00
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 220 FLDKYGNFVKESAL*NWNMQENSGGLSKIINQKG 321
           FL++  N + ++A  +WN   NSG  S I+   G
Sbjct: 273 FLERMSNDLGKTAEFDWNKPINSGFYSTIMYSNG 306


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 1.00
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 220 FLDKYGNFVKESAL*NWNMQENSGGLSKIINQKG 321
           FL++  N + ++A  +WN   NSG  S I+   G
Sbjct: 273 FLERMSNDLGKTAEFDWNKPINSGFYSTIMYSNG 306


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 171 KLNTPTHLSGSKITSHTPKNTLKLH*HTIVVNTK 70
           K+N     SG+KI+  T K+ +K +  T V N+K
Sbjct: 544 KMNETYINSGNKISLATSKSFIKANSQTEVSNSK 577


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
          monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 43 IICGICSVIFCVYHYCVS 96
          I+CGI  +   +Y+Y  S
Sbjct: 7  ILCGIAVLFLALYYYLTS 24


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 342 YTACKAFKQLLQELGDFAGQREV--VAENLQSNVVRELHLL 458
           +++ K  +    ELG    ++ +  + E LQ NV+++ HLL
Sbjct: 124 FSSLKDHQHQFAELGRKKLEQAIQQLQEQLQLNVIQQTHLL 164


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 564 TNVRRESRKEHSRPSK 611
           T +RR  +  H+RPSK
Sbjct: 16  TRLRRHIQNVHTRPSK 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,308
Number of Sequences: 438
Number of extensions: 4149
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)