Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0723
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...    30   0.43 
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...    30   0.43 
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    29   0.99 
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    27   2.3  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    27   2.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   3.0  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    26   7.0  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    25   9.2  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    25   9.2  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -2

Query: 497 FVPRIIRIGNDTSLVVYSSKCHRTSFVKTRYCHKYPRFFT*PMLHIDINRHRGPRY 330
           FV ++   G   +  V S+K HRT  ++  Y H  P++      H ++  H  P +
Sbjct: 57  FVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAF 112


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -2

Query: 497 FVPRIIRIGNDTSLVVYSSKCHRTSFVKTRYCHKYPRFFT*PMLHIDINRHRGPRY 330
           FV ++   G   +  V S+K HRT  ++  Y H  P++      H ++  H  P +
Sbjct: 57  FVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAF 112


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -3

Query: 301 RASSFGNTNSSSAHCLPRGDYSSLRDRANSTPNNMTIEKIARFRTT 164
           R+ S GNT S         D+   R+R+NSTP +++    A +RTT
Sbjct: 98  RSLSVGNTRSLKRDSRGSSDHLLTRNRSNSTPGSIS----ADYRTT 139


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +2

Query: 176  SSDFFYCHIVWRAVGPVSERRIISAW*AMGGTGVRVSER-RSPVICIRETILR 331
            ++DFF CH++   + PV     I  W +M    ++ S++ R P+  +R+  LR
Sbjct: 1776 AADFFLCHLLLFLMLPVLLIPFIDRWHSMMLFWLKPSKQIRPPIYSMRQNRLR 1828


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 17  RTPVSIINIFICTYINSINSFTSLSTLR*GTVN*QLNKILSCWMLLNWK 163
           RT V    I +C Y+  +N+F SL ++     +  ++++   W  LN K
Sbjct: 730 RTNVLAYFIQVCDYLRELNNFASLFSIISALNSSPIHRLRKTWANLNSK 778


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 182 RSIPYDISSLKASNS*GSYLIVNLQF 105
           RS P D+SS   S + GS+L  NL F
Sbjct: 478 RSSPRDLSSFSTSVNDGSFLFKNLMF 503


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -1

Query: 432 QDVLRQNEVLSQISAIFYLTYVAHRHQSAPRTQVRKIVSLMHMTGLLRSETRTPVPPI 259
           ++ +RQNE  +   A  +     H +     T+ R+     H TGL   +T T   PI
Sbjct: 60  EEKIRQNEQANTKFAFLHANDPYHPYYQHKLTEAREGKLKSHATGLSTQKTSTLARPI 117


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -1

Query: 594 SPILPASIIQRRLHSSIATLNTEVSPPQFAPGFRAKNNPDRQRYVPRRLQFQMS 433
           S +LP ++    L  S++ L     PPQFA  F  +    R  Y+P+  +F  S
Sbjct: 588 SSVLPQTVFF--LEDSVSILKNPNIPPQFAVNFMKEFL--RGSYIPQLYKFMSS 637


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -2

Query: 281 HELQFRPLPTTRRLFFAPRPGQQHAKQYDNRKNRSIPY 168
           H   + PL      +  P P   HA  Y +  ++S+PY
Sbjct: 175 HRWLYAPLHKLHHKWIVPTPYSSHAFHYLDGYSQSLPY 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,273,889
Number of Sequences: 5004
Number of extensions: 72869
Number of successful extensions: 175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)