Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0723
         (780 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0719 + 20388246-20390756,20391159-20391263                       31   1.0  
01_02_0118 + 11271020-11271293,11272849-11273145,11273226-112734...    31   1.0  
05_06_0180 + 26173452-26173692,26174456-26174698,26174796-261750...    29   4.1  
03_05_1044 + 29908348-29908503,29909495-29909626,29910049-299103...    29   4.1  
05_01_0135 + 908803-909059,913133-913187,913499-914047,914140-91...    29   5.5  
08_02_1553 + 27835320-27835364,27836853-27836966,27837062-278374...    28   7.2  

>08_02_0719 + 20388246-20390756,20391159-20391263
          Length = 871

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -1

Query: 456 RRLQFQMSQDVLRQNEVLSQISAIFYLTYVAHRHQSAPRTQVRKIVSL 313
           RR+  Q+ +D  RQN  LS++  +F    + H  +    T   K++S+
Sbjct: 525 RRMSIQIEEDDFRQNVSLSKLQTLFISNKIPHVPKLLSSTTALKVLSM 572


>01_02_0118 +
           11271020-11271293,11272849-11273145,11273226-11273439,
           11273563-11273672,11273746-11273945,11274439-11274501,
           11274560-11274663,11274868-11275055,11275129-11275328,
           11275463-11275693
          Length = 626

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 14  IRTPVSIINIFICTYINSINSFTSLSTLR*GTVN*QLNK 130
           IR  + I N+F C + N ++ FTS   L   TV  ++ K
Sbjct: 492 IREHIPITNLFTCLWFNEVDRFTSRDQLSFSTVRDKIRK 530


>05_06_0180 +
           26173452-26173692,26174456-26174698,26174796-26175009,
           26175115-26175194,26175381-26175502,26175950-26176053,
           26176457-26176644,26176725-26176924,26177104-26177331
          Length = 539

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 14  IRTPVSIINIFICTYINSINSFTSLSTLR*GTVN*QLNKILSCWM 148
           IR  + I N+F C + N ++ FTS   +   TV  ++   +  WM
Sbjct: 406 IREHIPITNLFTCLWFNEVDRFTSRDQISFSTVRDKIRARVG-WM 449


>03_05_1044 +
           29908348-29908503,29909495-29909626,29910049-29910364,
           29910447-29910510,29910614-29910727,29910806-29910968,
           29911166-29911316,29911403-29911986,29912313-29912542,
           29912791-29913045,29913293-29913590
          Length = 820

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
 Frame = -2

Query: 575 PLSRDDCIHQSQL*TQKLVLRSLPLVF---------VPRIIRIGNDTSLVVYSSKCHRTS 423
           P+ R+D + + +  T+K+  R  PL F         VP +I  G+DT L  YS++   T 
Sbjct: 361 PICREDALPEEK--TKKIRRREKPLEFSYHKWAHLGVPMLISGGDDTKLFAYSAR-EFTQ 417

Query: 422 FVKTRYC 402
           F    +C
Sbjct: 418 FAPHNFC 424


>05_01_0135 +
           908803-909059,913133-913187,913499-914047,914140-914365,
           914446-914906
          Length = 515

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 119 QLNKILSCWMLLNWKCRTESSDFFYCHIVWRAVGPVSER 235
           Q+  +++C  L NW       ++ Y H  W  V P S R
Sbjct: 441 QVKTVIACCTLHNWILDNGDDEYVYDHETWYRVLPRSNR 479


>08_02_1553 +
           27835320-27835364,27836853-27836966,27837062-27837457,
           27837751-27837822,27837957-27838082,27838164-27838244,
           27838364-27838558,27839018-27840013
          Length = 674

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = -3

Query: 409 GIVTNIRDFLPDLCCTSTSIGTEDPGT*NRFSNAYDRASSFGNTNSSSAHCLPRGDYSSL 230
           GI T +   +  L    TSI   DPG  ++F N +  A + G T     +   RGD ++ 
Sbjct: 48  GIYTPVAFVVFILYIRCTSINPADPGIMSKFQNGFRNAPTSG-TGLQDTNLPGRGDVATG 106

Query: 229 RDRANST 209
            +   ST
Sbjct: 107 TNSPTST 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,133,791
Number of Sequences: 37544
Number of extensions: 476185
Number of successful extensions: 1131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)