Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0723
         (780 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_9193| Best HMM Match : FCH (HMM E-Value=1.6)                        28   7.4  
SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  

>SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -1

Query: 372 YVAHRHQSAPRTQVRKIVSLMHMTGLLRSETRTPVPPIAYHAEIILRSETGP 217
           Y AHR +SAP   ++  +S+  ++  ++  + T  P     A+I   SE GP
Sbjct: 209 YHAHRRRSAPSASIKSSISVKPLSSTVKPNSPTEAP-----AKIKSISEPGP 255


>SB_9193| Best HMM Match : FCH (HMM E-Value=1.6)
          Length = 458

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 21/86 (24%), Positives = 36/86 (41%)
 Frame = +2

Query: 494 RKPGANCGGLTSVFRVAIDECNRLWIMDAGKIGDTQYCPPQVLAFDLGHRSTCVSACRQH 673
           R+   N  G   V R   + C + W +   K+G T    P ++A  L  R T +    +H
Sbjct: 358 REKAVNDKGEQMVSR-KYNRCTKEWDLRIIKVGKTYDYIPMLMAMILRKRFTDIDGITRH 416

Query: 674 IKLTLQPLLFIYXPWSIVRX*VSREI 751
           + L       I   +++ +   SRE+
Sbjct: 417 VSLAEDDPARIQPTFAMAKPVSSREL 442


>SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1571

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 345 PRTQVRKIVSLMHMTGLLRSETRTPVPPIA 256
           PR  V+KI+   H  GL+ + T T  P +A
Sbjct: 820 PRFLVKKIIVFTHKKGLIMNPTGTTTPSLA 849


>SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 20/74 (27%), Positives = 36/74 (48%)
 Frame = -3

Query: 421 SSKRGIVTNIRDFLPDLCCTSTSIGTEDPGT*NRFSNAYDRASSFGNTNSSSAHCLPRGD 242
           SS+  +   I   +P + CTS+S         +R S++   ++S  +++SSS+     G 
Sbjct: 97  SSRMFVYILIAFLVPYVTCTSSSSSNS-----SRSSSSSSNSNSNSSSSSSSSSSSSSGS 151

Query: 241 YSSLRDRANSTPNN 200
            SS    +NS  N+
Sbjct: 152 SSSSNSNSNSNSNS 165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,739,095
Number of Sequences: 59808
Number of extensions: 546280
Number of successful extensions: 1430
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1427
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)