Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0723
         (780 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK024718-1|BAB14973.1|  196|Homo sapiens protein ( Homo sapiens ...    31   3.5  
AJ310567-1|CAC83946.1| 1544|Homo sapiens phosphoinositide-bindin...    31   3.5  
AY358546-1|AAQ88910.1|  592|Homo sapiens ROR-alpha protein.            31   4.7  
AF502591-1|AAQ07460.1|  982|Homo sapiens BRCC1 protein.                31   4.7  

>AK024718-1|BAB14973.1|  196|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21065 fis, clone CAS01339. ).
          Length = 196

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 16/69 (23%), Positives = 35/69 (50%)
 Frame = -1

Query: 594 SPILPASIIQRRLHSSIATLNTEVSPPQFAPGFRAKNNPDRQRYVPRRLQFQMSQDVLRQ 415
           +P+     + +   S  +TL  E  PP+  PG  +K++P  +  +  +L  ++S  +LR+
Sbjct: 89  NPLTSQKSLDQPFLSKSSTLGQEERPPEPPPGPPSKSSPQARGSLEEQLLQELSSLILRK 148

Query: 414 NEVLSQISA 388
            E  + + +
Sbjct: 149 GETTAGLGS 157


>AJ310567-1|CAC83946.1| 1544|Homo sapiens phosphoinositide-binding
            proteins protein.
          Length = 1544

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 16/69 (23%), Positives = 35/69 (50%)
 Frame = -1

Query: 594  SPILPASIIQRRLHSSIATLNTEVSPPQFAPGFRAKNNPDRQRYVPRRLQFQMSQDVLRQ 415
            +P+     + +   S  +TL  E  PP+  PG  +K++P  +  +  +L  ++S  +LR+
Sbjct: 1437 NPLTSQKSLDQPFLSKSSTLGQEERPPEPPPGPPSKSSPQARGSLEEQLLQELSSLILRK 1496

Query: 414  NEVLSQISA 388
             E  + + +
Sbjct: 1497 GETTAGLGS 1505


>AY358546-1|AAQ88910.1|  592|Homo sapiens ROR-alpha protein.
          Length = 592

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 457 SSSTVPNVTGRPSSKRGIVTNIRDFLPDLCCTSTSI 350
           S+STVPN+T  P++ +   T +    PD+   S S+
Sbjct: 421 STSTVPNMTDAPTAPKAGTTTVAPSAPDISANSRSL 456


>AF502591-1|AAQ07460.1|  982|Homo sapiens BRCC1 protein.
          Length = 982

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 457 SSSTVPNVTGRPSSKRGIVTNIRDFLPDLCCTSTSI 350
           S+STVPN+T  P++ +   T +    PD+   S S+
Sbjct: 421 STSTVPNMTDAPTAPKAGTTTVAPSAPDISANSRSL 456


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,698,054
Number of Sequences: 237096
Number of extensions: 2595921
Number of successful extensions: 4557
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4557
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9478778060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)