Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0723
(780 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16860.1 68416.m02156 phytochelatin synthetase-related contai... 29 2.6
At2g44910.1 68415.m05590 homeobox-leucine zipper protein 4 (HB-4... 29 2.6
At1g60850.3 68414.m06850 DNA-directed RNA polymerase, putative i... 29 2.6
At1g60850.2 68414.m06849 DNA-directed RNA polymerase, putative i... 29 2.6
At1g60850.1 68414.m06848 DNA-directed RNA polymerase, putative i... 29 2.6
At4g20720.1 68417.m03011 dentin sialophosphoprotein-related cont... 29 3.5
At1g53040.2 68414.m06006 expressed protein contains Pfam profile... 28 6.0
At1g53040.1 68414.m06005 expressed protein contains Pfam profile... 28 6.0
At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containi... 28 6.0
At2g43860.1 68415.m05453 polygalacturonase, putative / pectinase... 28 8.0
At1g28240.1 68414.m03466 expressed protein 28 8.0
At1g28220.1 68414.m03464 purine permease, putative similar to pu... 28 8.0
>At3g16860.1 68416.m02156 phytochelatin synthetase-related contains
Pfam PF04833: Phytochelatin synthetase-like conserved
region
Length = 653
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = -3
Query: 466 IRPSSSTVPNVTGRPSSKRG-----IVTNIRDFLPDLCCTSTS 353
+R SSS P+ +G PS+K +V NI P CC S S
Sbjct: 375 LRVSSSQFPDTSGLPSNKSAFASWQVVCNITQPTPPKCCVSFS 417
>At2g44910.1 68415.m05590 homeobox-leucine zipper protein 4 (HB-4) /
HD-ZIP protein 4 identical to Homeobox-leucine zipper
protein ATHB-4 (HD-ZIP protein ATHB-4) (SP:P92953)
[Arabidopsis thaliana]
Length = 318
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -3
Query: 511 VCPWFSCQE*SG*A---TIRPSSSTVPNVTGRPSSKR 410
+CP SC+ S A T PS++T P V GRPS +R
Sbjct: 269 MCP--SCERVSSSAATVTAAPSTTTTPTVVGRPSPQR 303
>At1g60850.3 68414.m06850 DNA-directed RNA polymerase, putative
identical to RNA polymerase subunit [Arabidopsis
thaliana] GI:514322; contains Pfam profile PF01000: RNA
polymerase Rpb3/RpoA insert domain
Length = 302
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 513 QFAPGFRAKNNPDRQRYVPRRLQFQMSQDVLRQNEVLSQISAIFYLTYVA 364
QFA F + PD +P L+ Q ++ V + N SAI+ TYV+
Sbjct: 8 QFAKNFNIDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVS 57
>At1g60850.2 68414.m06849 DNA-directed RNA polymerase, putative
identical to RNA polymerase subunit [Arabidopsis
thaliana] GI:514322; contains Pfam profile PF01000: RNA
polymerase Rpb3/RpoA insert domain
Length = 375
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 513 QFAPGFRAKNNPDRQRYVPRRLQFQMSQDVLRQNEVLSQISAIFYLTYVA 364
QFA F + PD +P L+ Q ++ V + N SAI+ TYV+
Sbjct: 8 QFAKNFNIDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVS 57
>At1g60850.1 68414.m06848 DNA-directed RNA polymerase, putative
identical to RNA polymerase subunit [Arabidopsis
thaliana] GI:514322; contains Pfam profile PF01000: RNA
polymerase Rpb3/RpoA insert domain
Length = 375
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 513 QFAPGFRAKNNPDRQRYVPRRLQFQMSQDVLRQNEVLSQISAIFYLTYVA 364
QFA F + PD +P L+ Q ++ V + N SAI+ TYV+
Sbjct: 8 QFAKNFNIDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVS 57
>At4g20720.1 68417.m03011 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Swiss-Prot:Q9NZW4) [Homo sapiens]
Length = 729
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -3
Query: 295 SSFGNTNSSSAHCLPRGDYSSLRDRANSTPNNMTIEKIARFRTTFPV*KHPTAEDLI 125
SS G TNS +P G + R + T++ + TT P K AE+L+
Sbjct: 650 SSGGKTNSEEVKVIPSGTSTLDRPSDPDGSKDQTVDLVVGTTTTVPKSKSDVAEELM 706
>At1g53040.2 68414.m06006 expressed protein contains Pfam profile:
PF04765 protein of unknown function (DUF616)
Length = 540
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 14 IRTPVSIINIFICTYINSINSFTSLSTL 97
IR + I N+F C + N ++ FTS L
Sbjct: 421 IREHIPITNLFTCVWFNEVDRFTSRDQL 448
>At1g53040.1 68414.m06005 expressed protein contains Pfam profile:
PF04765 protein of unknown function (DUF616)
Length = 540
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 14 IRTPVSIINIFICTYINSINSFTSLSTL 97
IR + I N+F C + N ++ FTS L
Sbjct: 421 IREHIPITNLFTCVWFNEVDRFTSRDQL 448
>At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containing
protein low similarity to CRP1 [Zea mays] GI:3289002;
contains Pfam profile PF01535: PPR repeat
Length = 793
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Frame = +2
Query: 407 TSF*RRTSCDIWNCRRRGTYRCLSG--LFLARKPGANCGGLTSVFRVAIDE--CNRLW 568
T F T D+W+ RR +SG L AR P L ++A+DE C+ W
Sbjct: 62 TRFRTSTRFDVWSIHRREAISSISGSILLQARDPAK----LNEEIQIAVDEHRCDEAW 115
>At2g43860.1 68415.m05453 polygalacturonase, putative / pectinase,
putative similar to SP|P48979 Polygalacturonase
precursor (EC 3.2.1.15) (PG) (Pectinase) {Prunus
persica}; contains Pfam profile PF00295: Glycosyl
hydrolases family 28 (polygalacturonases)
Length = 405
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Frame = +2
Query: 437 IWNCRRRGTYRCLSG---LFLARKPGANCGGLTSV----FRVAIDECNRLWIMDAGKIGD 595
+W C+ G + C +G L + GLTS+ F + ID N + I D K+
Sbjct: 138 LWKCKNNGGHNCPTGAKSLVFSGSNNIKISGLTSINSQKFHIVIDNSNNVNI-DGVKVSA 196
Query: 596 TQYCP 610
+ P
Sbjct: 197 DENSP 201
>At1g28240.1 68414.m03466 expressed protein
Length = 581
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 14 IRTPVSIINIFICTYINSINSFTSLSTLR*GTV 112
+R V I N+F C + N ++ FTS + TV
Sbjct: 447 LREHVPISNLFTCLWFNEVDRFTSRDQISFSTV 479
>At1g28220.1 68414.m03464 purine permease, putative similar to
purine permease GI:7620007 from [Arabidopsis thaliana]
Length = 351
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +1
Query: 553 MQSSLDNGRRQDWRYTILSTSGLSV*PWPQIDLCIGMSSTYQVNTSTSFIYLXP 714
M+ +NG ++ W T L T+G V P + I + V STSF + P
Sbjct: 24 MRLYFNNGGKRIWFSTFLETAGFPVIFIPLLFSYITRRRSNNVGDSTSFFLIKP 77
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,048,102
Number of Sequences: 28952
Number of extensions: 380868
Number of successful extensions: 987
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -