BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0723 (780 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g16860.1 68416.m02156 phytochelatin synthetase-related contai... 29 2.6 At2g44910.1 68415.m05590 homeobox-leucine zipper protein 4 (HB-4... 29 2.6 At1g60850.3 68414.m06850 DNA-directed RNA polymerase, putative i... 29 2.6 At1g60850.2 68414.m06849 DNA-directed RNA polymerase, putative i... 29 2.6 At1g60850.1 68414.m06848 DNA-directed RNA polymerase, putative i... 29 2.6 At4g20720.1 68417.m03011 dentin sialophosphoprotein-related cont... 29 3.5 At1g53040.2 68414.m06006 expressed protein contains Pfam profile... 28 6.0 At1g53040.1 68414.m06005 expressed protein contains Pfam profile... 28 6.0 At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containi... 28 6.0 At2g43860.1 68415.m05453 polygalacturonase, putative / pectinase... 28 8.0 At1g28240.1 68414.m03466 expressed protein 28 8.0 At1g28220.1 68414.m03464 purine permease, putative similar to pu... 28 8.0 >At3g16860.1 68416.m02156 phytochelatin synthetase-related contains Pfam PF04833: Phytochelatin synthetase-like conserved region Length = 653 Score = 29.5 bits (63), Expect = 2.6 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 5/43 (11%) Frame = -3 Query: 466 IRPSSSTVPNVTGRPSSKRG-----IVTNIRDFLPDLCCTSTS 353 +R SSS P+ +G PS+K +V NI P CC S S Sbjct: 375 LRVSSSQFPDTSGLPSNKSAFASWQVVCNITQPTPPKCCVSFS 417 >At2g44910.1 68415.m05590 homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein 4 identical to Homeobox-leucine zipper protein ATHB-4 (HD-ZIP protein ATHB-4) (SP:P92953) [Arabidopsis thaliana] Length = 318 Score = 29.5 bits (63), Expect = 2.6 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%) Frame = -3 Query: 511 VCPWFSCQE*SG*A---TIRPSSSTVPNVTGRPSSKR 410 +CP SC+ S A T PS++T P V GRPS +R Sbjct: 269 MCP--SCERVSSSAATVTAAPSTTTTPTVVGRPSPQR 303 >At1g60850.3 68414.m06850 DNA-directed RNA polymerase, putative identical to RNA polymerase subunit [Arabidopsis thaliana] GI:514322; contains Pfam profile PF01000: RNA polymerase Rpb3/RpoA insert domain Length = 302 Score = 29.5 bits (63), Expect = 2.6 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = -1 Query: 513 QFAPGFRAKNNPDRQRYVPRRLQFQMSQDVLRQNEVLSQISAIFYLTYVA 364 QFA F + PD +P L+ Q ++ V + N SAI+ TYV+ Sbjct: 8 QFAKNFNIDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVS 57 >At1g60850.2 68414.m06849 DNA-directed RNA polymerase, putative identical to RNA polymerase subunit [Arabidopsis thaliana] GI:514322; contains Pfam profile PF01000: RNA polymerase Rpb3/RpoA insert domain Length = 375 Score = 29.5 bits (63), Expect = 2.6 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = -1 Query: 513 QFAPGFRAKNNPDRQRYVPRRLQFQMSQDVLRQNEVLSQISAIFYLTYVA 364 QFA F + PD +P L+ Q ++ V + N SAI+ TYV+ Sbjct: 8 QFAKNFNIDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVS 57 >At1g60850.1 68414.m06848 DNA-directed RNA polymerase, putative identical to RNA polymerase subunit [Arabidopsis thaliana] GI:514322; contains Pfam profile PF01000: RNA polymerase Rpb3/RpoA insert domain Length = 375 Score = 29.5 bits (63), Expect = 2.6 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = -1 Query: 513 QFAPGFRAKNNPDRQRYVPRRLQFQMSQDVLRQNEVLSQISAIFYLTYVA 364 QFA F + PD +P L+ Q ++ V + N SAI+ TYV+ Sbjct: 8 QFAKNFNIDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVS 57 >At4g20720.1 68417.m03011 dentin sialophosphoprotein-related contains weak similarity to dentin sialophosphoprotein precursor (Swiss-Prot:Q9NZW4) [Homo sapiens] Length = 729 Score = 29.1 bits (62), Expect = 3.5 Identities = 17/57 (29%), Positives = 25/57 (43%) Frame = -3 Query: 295 SSFGNTNSSSAHCLPRGDYSSLRDRANSTPNNMTIEKIARFRTTFPV*KHPTAEDLI 125 SS G TNS +P G + R + T++ + TT P K AE+L+ Sbjct: 650 SSGGKTNSEEVKVIPSGTSTLDRPSDPDGSKDQTVDLVVGTTTTVPKSKSDVAEELM 706 >At1g53040.2 68414.m06006 expressed protein contains Pfam profile: PF04765 protein of unknown function (DUF616) Length = 540 Score = 28.3 bits (60), Expect = 6.0 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +2 Query: 14 IRTPVSIINIFICTYINSINSFTSLSTL 97 IR + I N+F C + N ++ FTS L Sbjct: 421 IREHIPITNLFTCVWFNEVDRFTSRDQL 448 >At1g53040.1 68414.m06005 expressed protein contains Pfam profile: PF04765 protein of unknown function (DUF616) Length = 540 Score = 28.3 bits (60), Expect = 6.0 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +2 Query: 14 IRTPVSIINIFICTYINSINSFTSLSTL 97 IR + I N+F C + N ++ FTS L Sbjct: 421 IREHIPITNLFTCVWFNEVDRFTSRDQL 448 >At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containing protein low similarity to CRP1 [Zea mays] GI:3289002; contains Pfam profile PF01535: PPR repeat Length = 793 Score = 28.3 bits (60), Expect = 6.0 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%) Frame = +2 Query: 407 TSF*RRTSCDIWNCRRRGTYRCLSG--LFLARKPGANCGGLTSVFRVAIDE--CNRLW 568 T F T D+W+ RR +SG L AR P L ++A+DE C+ W Sbjct: 62 TRFRTSTRFDVWSIHRREAISSISGSILLQARDPAK----LNEEIQIAVDEHRCDEAW 115 >At2g43860.1 68415.m05453 polygalacturonase, putative / pectinase, putative similar to SP|P48979 Polygalacturonase precursor (EC 3.2.1.15) (PG) (Pectinase) {Prunus persica}; contains Pfam profile PF00295: Glycosyl hydrolases family 28 (polygalacturonases) Length = 405 Score = 27.9 bits (59), Expect = 8.0 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 7/65 (10%) Frame = +2 Query: 437 IWNCRRRGTYRCLSG---LFLARKPGANCGGLTSV----FRVAIDECNRLWIMDAGKIGD 595 +W C+ G + C +G L + GLTS+ F + ID N + I D K+ Sbjct: 138 LWKCKNNGGHNCPTGAKSLVFSGSNNIKISGLTSINSQKFHIVIDNSNNVNI-DGVKVSA 196 Query: 596 TQYCP 610 + P Sbjct: 197 DENSP 201 >At1g28240.1 68414.m03466 expressed protein Length = 581 Score = 27.9 bits (59), Expect = 8.0 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = +2 Query: 14 IRTPVSIINIFICTYINSINSFTSLSTLR*GTV 112 +R V I N+F C + N ++ FTS + TV Sbjct: 447 LREHVPISNLFTCLWFNEVDRFTSRDQISFSTV 479 >At1g28220.1 68414.m03464 purine permease, putative similar to purine permease GI:7620007 from [Arabidopsis thaliana] Length = 351 Score = 27.9 bits (59), Expect = 8.0 Identities = 17/54 (31%), Positives = 25/54 (46%) Frame = +1 Query: 553 MQSSLDNGRRQDWRYTILSTSGLSV*PWPQIDLCIGMSSTYQVNTSTSFIYLXP 714 M+ +NG ++ W T L T+G V P + I + V STSF + P Sbjct: 24 MRLYFNNGGKRIWFSTFLETAGFPVIFIPLLFSYITRRRSNNVGDSTSFFLIKP 77 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,048,102 Number of Sequences: 28952 Number of extensions: 380868 Number of successful extensions: 987 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 955 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 987 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1746037600 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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