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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0723
         (780 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16860.1 68416.m02156 phytochelatin synthetase-related contai...    29   2.6  
At2g44910.1 68415.m05590 homeobox-leucine zipper protein 4 (HB-4...    29   2.6  
At1g60850.3 68414.m06850 DNA-directed RNA polymerase, putative i...    29   2.6  
At1g60850.2 68414.m06849 DNA-directed RNA polymerase, putative i...    29   2.6  
At1g60850.1 68414.m06848 DNA-directed RNA polymerase, putative i...    29   2.6  
At4g20720.1 68417.m03011 dentin sialophosphoprotein-related cont...    29   3.5  
At1g53040.2 68414.m06006 expressed protein contains Pfam profile...    28   6.0  
At1g53040.1 68414.m06005 expressed protein contains Pfam profile...    28   6.0  
At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containi...    28   6.0  
At2g43860.1 68415.m05453 polygalacturonase, putative / pectinase...    28   8.0  
At1g28240.1 68414.m03466 expressed protein                             28   8.0  
At1g28220.1 68414.m03464 purine permease, putative similar to pu...    28   8.0  

>At3g16860.1 68416.m02156 phytochelatin synthetase-related contains
           Pfam PF04833: Phytochelatin synthetase-like conserved
           region
          Length = 653

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -3

Query: 466 IRPSSSTVPNVTGRPSSKRG-----IVTNIRDFLPDLCCTSTS 353
           +R SSS  P+ +G PS+K       +V NI    P  CC S S
Sbjct: 375 LRVSSSQFPDTSGLPSNKSAFASWQVVCNITQPTPPKCCVSFS 417


>At2g44910.1 68415.m05590 homeobox-leucine zipper protein 4 (HB-4) /
           HD-ZIP protein 4 identical to  Homeobox-leucine zipper
           protein ATHB-4 (HD-ZIP protein ATHB-4)  (SP:P92953)
           [Arabidopsis thaliana]
          Length = 318

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -3

Query: 511 VCPWFSCQE*SG*A---TIRPSSSTVPNVTGRPSSKR 410
           +CP  SC+  S  A   T  PS++T P V GRPS +R
Sbjct: 269 MCP--SCERVSSSAATVTAAPSTTTTPTVVGRPSPQR 303


>At1g60850.3 68414.m06850 DNA-directed RNA polymerase, putative
           identical to RNA polymerase subunit [Arabidopsis
           thaliana] GI:514322; contains Pfam profile PF01000: RNA
           polymerase Rpb3/RpoA insert domain
          Length = 302

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -1

Query: 513 QFAPGFRAKNNPDRQRYVPRRLQFQMSQDVLRQNEVLSQISAIFYLTYVA 364
           QFA  F   + PD    +P  L+ Q ++ V + N      SAI+  TYV+
Sbjct: 8   QFAKNFNIDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVS 57


>At1g60850.2 68414.m06849 DNA-directed RNA polymerase, putative
           identical to RNA polymerase subunit [Arabidopsis
           thaliana] GI:514322; contains Pfam profile PF01000: RNA
           polymerase Rpb3/RpoA insert domain
          Length = 375

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -1

Query: 513 QFAPGFRAKNNPDRQRYVPRRLQFQMSQDVLRQNEVLSQISAIFYLTYVA 364
           QFA  F   + PD    +P  L+ Q ++ V + N      SAI+  TYV+
Sbjct: 8   QFAKNFNIDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVS 57


>At1g60850.1 68414.m06848 DNA-directed RNA polymerase, putative
           identical to RNA polymerase subunit [Arabidopsis
           thaliana] GI:514322; contains Pfam profile PF01000: RNA
           polymerase Rpb3/RpoA insert domain
          Length = 375

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -1

Query: 513 QFAPGFRAKNNPDRQRYVPRRLQFQMSQDVLRQNEVLSQISAIFYLTYVA 364
           QFA  F   + PD    +P  L+ Q ++ V + N      SAI+  TYV+
Sbjct: 8   QFAKNFNIDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVS 57


>At4g20720.1 68417.m03011 dentin sialophosphoprotein-related
           contains weak similarity to dentin sialophosphoprotein
           precursor (Swiss-Prot:Q9NZW4) [Homo sapiens]
          Length = 729

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -3

Query: 295 SSFGNTNSSSAHCLPRGDYSSLRDRANSTPNNMTIEKIARFRTTFPV*KHPTAEDLI 125
           SS G TNS     +P G  +  R        + T++ +    TT P  K   AE+L+
Sbjct: 650 SSGGKTNSEEVKVIPSGTSTLDRPSDPDGSKDQTVDLVVGTTTTVPKSKSDVAEELM 706


>At1g53040.2 68414.m06006 expressed protein contains Pfam profile:
           PF04765 protein of unknown function (DUF616)
          Length = 540

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 14  IRTPVSIINIFICTYINSINSFTSLSTL 97
           IR  + I N+F C + N ++ FTS   L
Sbjct: 421 IREHIPITNLFTCVWFNEVDRFTSRDQL 448


>At1g53040.1 68414.m06005 expressed protein contains Pfam profile:
           PF04765 protein of unknown function (DUF616)
          Length = 540

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 14  IRTPVSIINIFICTYINSINSFTSLSTL 97
           IR  + I N+F C + N ++ FTS   L
Sbjct: 421 IREHIPITNLFTCVWFNEVDRFTSRDQL 448


>At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containing
           protein low similarity to CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 793

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = +2

Query: 407 TSF*RRTSCDIWNCRRRGTYRCLSG--LFLARKPGANCGGLTSVFRVAIDE--CNRLW 568
           T F   T  D+W+  RR     +SG  L  AR P      L    ++A+DE  C+  W
Sbjct: 62  TRFRTSTRFDVWSIHRREAISSISGSILLQARDPAK----LNEEIQIAVDEHRCDEAW 115


>At2g43860.1 68415.m05453 polygalacturonase, putative / pectinase,
           putative similar to SP|P48979 Polygalacturonase
           precursor (EC 3.2.1.15) (PG) (Pectinase) {Prunus
           persica}; contains Pfam profile PF00295: Glycosyl
           hydrolases family 28 (polygalacturonases)
          Length = 405

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
 Frame = +2

Query: 437 IWNCRRRGTYRCLSG---LFLARKPGANCGGLTSV----FRVAIDECNRLWIMDAGKIGD 595
           +W C+  G + C +G   L  +        GLTS+    F + ID  N + I D  K+  
Sbjct: 138 LWKCKNNGGHNCPTGAKSLVFSGSNNIKISGLTSINSQKFHIVIDNSNNVNI-DGVKVSA 196

Query: 596 TQYCP 610
            +  P
Sbjct: 197 DENSP 201


>At1g28240.1 68414.m03466 expressed protein
          Length = 581

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 14  IRTPVSIINIFICTYINSINSFTSLSTLR*GTV 112
           +R  V I N+F C + N ++ FTS   +   TV
Sbjct: 447 LREHVPISNLFTCLWFNEVDRFTSRDQISFSTV 479


>At1g28220.1 68414.m03464 purine permease, putative similar to
           purine permease GI:7620007 from [Arabidopsis thaliana]
          Length = 351

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +1

Query: 553 MQSSLDNGRRQDWRYTILSTSGLSV*PWPQIDLCIGMSSTYQVNTSTSFIYLXP 714
           M+   +NG ++ W  T L T+G  V   P +   I    +  V  STSF  + P
Sbjct: 24  MRLYFNNGGKRIWFSTFLETAGFPVIFIPLLFSYITRRRSNNVGDSTSFFLIKP 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,048,102
Number of Sequences: 28952
Number of extensions: 380868
Number of successful extensions: 987
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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