Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0722
         (715 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   0.81 
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    24   1.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   7.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   7.5  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 462 SILMHFQFYLDLPNILRQVISLE 394
           ++L HF +Y+D+ N+L   +S E
Sbjct: 241 TMLSHFAYYVDMANMLTTPLSEE 263



 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 348 FAIGSTISNTINLVFTPKILLDEEYLVNPSRIES 449
           FA    ++N +    + ++LLDE     P RI+S
Sbjct: 246 FAYYVDMANMLTTPLSEEVLLDELLRHFPERIQS 279


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 349 LPLALQFRIL*IWYLLQRY 405
           +PL  +FR L +W++L+ Y
Sbjct: 349 IPLGRRFRALKLWFVLRLY 367


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 607 DCSRP*HDDSDSANESSLNPTA 542
           D   P  DD++S N+S  +P A
Sbjct: 665 DAHTPPEDDAESLNQSISSPGA 686


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 607 DCSRP*HDDSDSANESSLNPTA 542
           D   P  DD++S N+S  +P A
Sbjct: 557 DAHTPPEDDAESLNQSISSPGA 578


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,306
Number of Sequences: 336
Number of extensions: 3453
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)