Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0722
         (715 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0)                   36   0.025
SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.13 
SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0)                   30   2.1  
SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0)                   30   2.1  
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_57180| Best HMM Match : Transglut_core (HMM E-Value=1.4e-14)        28   6.5  
SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0)                   28   6.5  
SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)             28   6.5  
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 612

 Score = 36.3 bits (80), Expect = 0.025
 Identities = 19/36 (52%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
 Frame = +1

Query: 475 LSSGVQSVSCGSFSGTFSTVLFQPLDLVKTRLQ-NP 579
           L+SG Q+  CG  +G  ++V+ QP D+VKTRLQ NP
Sbjct: 521 LTSG-QNFICGIMAGAMASVVTQPADVVKTRLQMNP 555


>SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 17/47 (36%), Positives = 29/47 (61%)
 Frame = +1

Query: 433 QVELKVHQNGHRD*LSSGVQSVSCGSFSGTFSTVLFQPLDLVKTRLQ 573
           Q E KVH N ++   +  ++S++CG+ SG  S  +  P D++K R+Q
Sbjct: 15  QGEPKVH-NPYKP--ADVIESLTCGALSGMISKAVILPFDIIKKRIQ 58


>SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 309

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 481 SGVQSVSCGSFSGTFSTVLFQPLDLVKTRLQNPN 582
           S  +++  GS SG       QPLDL+K RLQ  N
Sbjct: 19  SPARNLIAGSVSGMLGCAAGQPLDLLKVRLQAMN 52


>SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 313

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 478 SSGVQSVSCGSFSGTFSTVLFQPLDLVKTRLQ 573
           SSG+++   G F G        PLD +K RLQ
Sbjct: 24  SSGIKNFFAGGFGGVCCIATGHPLDTIKVRLQ 55


>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 496 VSCGSFSGTFSTVLFQPLDLVKTRLQNPNHHVMGG 600
           ++CG+ S T   +   PL LV+TRLQ       GG
Sbjct: 331 LACGTASSTCGQLASYPLSLVRTRLQAQAREKGGG 365


>SB_57180| Best HMM Match : Transglut_core (HMM E-Value=1.4e-14)
          Length = 422

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +1

Query: 496 VSCGSFSGTFSTVLFQPLDLVKTRLQNPNHH--VMG 597
           + CG+ S TF  + ++PL+LV  RL  P H   VMG
Sbjct: 344 IMCGT-SRTFRDLTYRPLNLVDGRLTMPPHRSAVMG 378


>SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 200

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 502 CGSFSGTFSTVLFQPLDLVKTRLQ 573
           CG+ +G  S  L  PLD+V+ R+Q
Sbjct: 112 CGALAGATSQTLAYPLDVVRRRMQ 135


>SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 505 GSFSGTFSTVLFQPLDLVKTRLQ 573
           G+ SG F+ ++ QP D+VKT  Q
Sbjct: 167 GAISGLFAALITQPFDVVKTHRQ 189


>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
          Length = 302

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 487 VQSVSCGSFSGTFSTVLFQPLDLVKTRLQ 573
           +  +  G  +G  ++V   PLD++KTRLQ
Sbjct: 206 IYCLGAGCLAGMTASVAVNPLDVIKTRLQ 234


>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 262

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 502 CGSFSGTFSTVLFQPLDLVKTRLQ 573
           CGS +G  S     PLD+V+ R+Q
Sbjct: 167 CGSLAGAVSQTATYPLDVVRRRMQ 190


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,289,284
Number of Sequences: 59808
Number of extensions: 401057
Number of successful extensions: 737
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)