Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0722
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    25   0.94 
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   3.8  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   3.8  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 285 YSDYSDTI*AYI*SYFNLNVLFAIGSTISNTINLVFTPKIL 407
           Y D S  + AY  +    + L+ + S + N I L+ +PK+L
Sbjct: 119 YKDCSGIVSAYKIAIDKFDRLWVLDSGLINNIQLMCSPKLL 159


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 487 VQSVSCGSFSGTFSTVLFQPLDLVKTRL 570
           V +++ G  +G  S     PLD  +TRL
Sbjct: 116 VGNLASGGAAGATSLCFVYPLDFARTRL 143


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 487 VQSVSCGSFSGTFSTVLFQPLDLVKTRL 570
           V +++ G  +G  S     PLD  +TRL
Sbjct: 116 VGNLASGGAAGATSLCFVYPLDFARTRL 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,302
Number of Sequences: 438
Number of extensions: 3941
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)