Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0721
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    52   1e-07
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch...    31   0.19 
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    31   0.19 
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    29   0.59 
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    25   7.3  
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    25   7.3  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    25   7.3  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    25   7.3  
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc...    25   7.3  
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.6  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    25   9.6  
SPAC1782.11 |met14||adenylyl-sulfate kinase |Schizosaccharomyces...    25   9.6  

>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
 Frame = +3

Query: 258 AFQRKFVNEVRRCDEMERKLRYLEKEIRRDGI--PMLEIPGECPEAPQPREMIDLEATFE 431
           AFQR FV E+RR  + ER LRYL  EI  +GI  P   +P       +   + D+     
Sbjct: 21  AFQRSFVREIRRLTDTERLLRYLHSEIDLNGIHVPDHNLPPSYESVLESSTIEDIIERIT 80

Query: 432 KLENELREVNQNAEALKRNYLELTE 506
           +LE  +R++ ++++ L+  YL+  E
Sbjct: 81  RLEARVRQLVESSQLLEARYLQQLE 105



 Score = 30.7 bits (66), Expect = 0.19
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +1

Query: 199 VSELGELGLVQFRDLNPDV 255
           +S LGEL  + F+DLNPDV
Sbjct: 1   MSALGELSTIHFKDLNPDV 19


>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
           Usp106|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
 Frame = +3

Query: 264 QRKFVNE-VRRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDL-EATFEKL 437
           +RK VN+ V+   E+ R L+   KE+  + I M EIP +     Q  ++ D+  A   +L
Sbjct: 142 KRKLVNDAVKHFIELNR-LKTYRKELYDEVISMNEIPSQASTTHQKLQVCDICSAYLSRL 200

Query: 438 ENELREVNQNAEALKRNYLELTEL 509
           +N+ R  +  +  +   Y  L  +
Sbjct: 201 DNDRRLADHFSGKMHLGYAMLRNI 224


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
 Frame = +3

Query: 285 VRRCDEMERKLRYLE--KEIRRDGIPML------EIPGECPEAPQP-REMIDLEATFEKL 437
           ++RC E+E K+  LE  + I ++ I  L      E   + PE  +P  + I + +   K 
Sbjct: 157 IQRCSELEEKINSLESAQSIEQEVISSLKDDKTVETKNDVPEVSRPSTDTIGVSSALSKK 216

Query: 438 ENELREVNQNAEALKRNYLELTE 506
           + +    NQ  ++ K+N    TE
Sbjct: 217 KKKRNRKNQKKKSTKQNIEATTE 239


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
            Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 234  PRFES*RNAFQRKFVNEVRRCDEMERKLRYLEKEIRRD 347
            PRF S R A   K ++ +   ++ E KLR + K I RD
Sbjct: 975  PRFASMRKAINPKVMDMIDGVEKKEAKLRSMIKTIHRD 1012


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 393 QPREMIDLEATFEKLENELREVNQNAEALKRN 488
           Q RE+I+ E    KLE+E   +  N E LK++
Sbjct: 740 QERELIESEKHRMKLESENLHLQANIELLKKD 771


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 390 PQPREMIDLEATFEKLENELREVNQNAEALKRN-YLELT 503
           P PR   +LEATFE   N + +V    +   R+ ++E+T
Sbjct: 469 PMPRGQAELEATFELDANGILKVTAVEKTTGRSAHIEIT 507


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = +3

Query: 291 RCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLENELREVNQNA 470
           R  + +R ++ + +E   D   +LE+P   PE    +++   E    ++EN  R  NQ+ 
Sbjct: 161 RMTKRQRAIQGILEEGEED--ELLELP---PETSGRKKLTPEEMALRRIENARRRKNQSE 215

Query: 471 EALKRNYLE 497
             L+   +E
Sbjct: 216 RRLEEEKME 224


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +1

Query: 199 VSELGELGLVQFRDLNPDVTPSNVSSSMRYVAAMRWNVSSVTWRRRSDVTGSPCWRSPES 378
           V  L ++G V  RDL P+     VS S++           + W + + +T   C  +P  
Sbjct: 469 VDYLHDMG-VAHRDLKPENLLLTVSGSLKITDFGNGECFRMAWEKEAHMTCGLCGSAPYI 527

Query: 379 VP 384
            P
Sbjct: 528 AP 529


>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 190 YACVSELGELGLVQFRDLN 246
           YACV+ +  LG++ FRD N
Sbjct: 171 YACVAMIAGLGVLGFRDPN 189


>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 345

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +3

Query: 276 VNEVRRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMID-LEATFEKLENELR 452
           VN  +R  + E+K+   ++E  R    +LE      E  Q +  I+ LEA  E+  +E  
Sbjct: 127 VNRKQRAAKEEQKI---QEEFERQITDLLE------EQQQLKLEIERLEAETERANSETE 177

Query: 453 EVNQNAEALKRNYLEL 500
           +  +  EAL+  Y EL
Sbjct: 178 QYEKQKEALEEEYEEL 193


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 21/67 (31%), Positives = 36/67 (53%)
 Frame = +3

Query: 264 QRKFVNEVRRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLEN 443
           Q K +NE  R   + +++ +LE+  RR+ IP+ E      +A Q  E  D E  +E+ E 
Sbjct: 667 QNKSMNE--RLRVIGKRIDHLERAYRREAIPLWE-----EDAKQQAEH-DREIFYER-EK 717

Query: 444 ELREVNQ 464
           + +EV +
Sbjct: 718 QRKEVQE 724


>SPAC1782.11 |met14||adenylyl-sulfate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 309 RKLRYLEKEI-RRDGIPMLEIPGECP-EAPQPRE 404
           RK R   +E  ++DG+P +E+  ECP E  + R+
Sbjct: 109 RKDRDQAREFHKKDGLPFIEVYVECPVEVAEQRD 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,186,325
Number of Sequences: 5004
Number of extensions: 39854
Number of successful extensions: 140
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)