Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0721
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21410.1 68415.m02548 vacuolar proton ATPase, putative simila...    62   4e-10
At4g39080.1 68417.m05534 vacuolar proton ATPase, putative simila...    61   6e-10
At2g28520.1 68415.m03465 vacuolar proton ATPase, putative simila...    60   1e-09
At5g52280.1 68418.m06488 protein transport protein-related low s...    31   0.51 
At1g26110.1 68414.m03186 expressed protein                             31   0.51 
At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger) fa...    30   1.6  
At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger) fa...    30   1.6  
At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger) fa...    30   1.6  
At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger) fa...    30   1.6  
At1g31420.1 68414.m03848 leucine-rich repeat transmembrane prote...    28   4.8  
At3g29180.1 68416.m03657 expressed protein                             28   6.3  
At3g06330.1 68416.m00729 zinc finger (C3HC4-type RING finger) fa...    28   6.3  
At5g61460.1 68418.m07712 structural maintenance of chromosomes (...    27   8.3  
At5g17930.1 68418.m02102 MA3 domain-containing protein low simil...    27   8.3  

>At2g21410.1 68415.m02548 vacuolar proton ATPase, putative similar
           to vacuolar proton ATPase 100-kDa subunit from
           Dictyostelium discoideum P|1384136|gb|AAB49621
          Length = 821

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 29/88 (32%), Positives = 53/88 (60%)
 Frame = +3

Query: 252 RNAFQRKFVNEVRRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFE 431
           ++ FQR +  +++RC EM RK+R+ ++++ + G+     P E  +     ++ D+E   E
Sbjct: 57  KSPFQRTYAAQIKRCGEMARKIRFFKEQMSKAGVT----PKETLDRENDIDLDDVEVKLE 112

Query: 432 KLENELREVNQNAEALKRNYLELTELNI 515
           +LE EL E+N N + L+R+Y EL E  +
Sbjct: 113 ELEAELVEINANNDKLQRSYNELVEYKL 140



 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 23/43 (53%), Positives = 31/43 (72%)
 Frame = +1

Query: 133 LFRSEEMTLCQLFLQSEAAYACVSELGELGLVQFRDLNPDVTP 261
           L RSE M L Q+ +  E+A+  VS LG+LGLVQF+DLN + +P
Sbjct: 17  LMRSEPMQLVQVIVPMESAHLTVSYLGDLGLVQFKDLNSEKSP 59


>At4g39080.1 68417.m05534 vacuolar proton ATPase, putative similar
           to Swiss-Prot:Q93050 vacuolar proton translocating
           ATPase 116 kDa subunit A isoform 1 (Clathrin-coated
           vesicle/synaptic vesicle proton pump 116 kDa subunit,
           Vacuolar proton pump subunit 1, Vacuolar adenosine
           triphosphatase subunit Ac116) [Homo sapiens]
          Length = 821

 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 29/88 (32%), Positives = 52/88 (59%)
 Frame = +3

Query: 252 RNAFQRKFVNEVRRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFE 431
           ++ FQR +  +++RC EM RK+R+   ++ + G+P  E+ G+        ++ D+E    
Sbjct: 56  KSPFQRTYAAQIKRCGEMARKIRFFRDQMSKAGVPAKEMQGK----ENDIDLDDVEVKLG 111

Query: 432 KLENELREVNQNAEALKRNYLELTELNI 515
           +LE EL E+N N + L+R+Y EL E  +
Sbjct: 112 ELEAELVEINANNDKLQRSYNELMEYKL 139



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 24/43 (55%), Positives = 31/43 (72%)
 Frame = +1

Query: 133 LFRSEEMTLCQLFLQSEAAYACVSELGELGLVQFRDLNPDVTP 261
           L RSE M L QL +  E+A+  VS LG+LGLVQF+DLN + +P
Sbjct: 16  LMRSETMQLVQLIVPMESAHLTVSYLGDLGLVQFKDLNSEKSP 58


>At2g28520.1 68415.m03465 vacuolar proton ATPase, putative similar
           to Swiss-Prot:Q93050 vacuolar proton translocating
           ATPase 116 kDa subunit A isoform 1 (Clathrin-coated
           vesicle/synaptic vesicle proton pump 116 kDa subunit,
           Vacuolar proton pump subunit 1, Vacuolar adenosine
           triphosphatase subunit Ac116) [Homo sapiens]
          Length = 817

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
 Frame = +3

Query: 252 RNAFQRKFVNEVRRCDEMERKLRYLEKEIRRDGI---PMLEIPGECPEAPQPREMIDLEA 422
           ++ FQR F N+V+RC EM RKLR+ + +I + G+   P LEI  +         + DLE 
Sbjct: 53  KSPFQRTFANQVKRCGEMSRKLRFFKDQIDKAGLRCSPRLEIEPDI-------ALGDLER 105

Query: 423 TFEKLENELREVNQNAEALKRNYLELTELNI 515
                E+E+ E+N N+E L++ Y EL E  I
Sbjct: 106 QLADHEHEVLEMNSNSEKLRQTYNELLEFKI 136



 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 25/43 (58%), Positives = 33/43 (76%)
 Frame = +1

Query: 133 LFRSEEMTLCQLFLQSEAAYACVSELGELGLVQFRDLNPDVTP 261
           L RSE+MTL QL +  E+A+  ++ LGELGL+QFRDLN D +P
Sbjct: 13  LMRSEKMTLVQLIIPVESAHRSITYLGELGLLQFRDLNADKSP 55


>At5g52280.1 68418.m06488 protein transport protein-related low
           similarity to  SP|P25386 Intracellular protein transport
           protein USO1 {Saccharomyces cerevisiae}
          Length = 853

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 23/81 (28%), Positives = 37/81 (45%)
 Frame = +3

Query: 264 QRKFVNEVRRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLEN 443
           Q  FV E    DE+ +++  L+ +IRR    M +I     EA + +E    E    KL +
Sbjct: 742 QNSFVQEKMENDELRKQVSNLKVDIRRKEEEMTKILDARMEA-RSQENGHKEENLSKLSD 800

Query: 444 ELREVNQNAEALKRNYLELTE 506
           EL        +++R   E+ E
Sbjct: 801 ELAYCKNKNSSMERELKEMEE 821


>At1g26110.1 68414.m03186 expressed protein
          Length = 611

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -2

Query: 426 RSLQDRSSPWVEAPRDTLRGSPAWGSRHV*SPSPGNGAYVPSHRSDVPH*RTYVGR 259
           + LQ ++SP V+ P  T+   PA    H  SP P +G+   +    +P   ++ G+
Sbjct: 84  KDLQVKASPPVQPPASTINNDPAIIQSHYPSPMPTSGSLPSTASGSLPDISSHNGQ 139


>At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type
          Length = 491

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = -3

Query: 494 EVVPLKSFSVLVNLSQLILKLFEGRFKI---DHLPGLRRLGTLSGDLQHGDPVTSDLLLQ 324
           E +PL    V++   +L L +FE R+++     + G  R+G ++ D   G PV     ++
Sbjct: 278 ESMPLFVMDVIIPCQKLSLHIFEPRYRLMVRRIMEGNHRMGMVALDSATGSPVDVACEVE 337

Query: 323 VTE 315
           +TE
Sbjct: 338 ITE 340


>At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type
          Length = 486

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = -3

Query: 494 EVVPLKSFSVLVNLSQLILKLFEGRFKI---DHLPGLRRLGTLSGDLQHGDPVTSDLLLQ 324
           E +PL    V++   +L L +FE R+++     + G  R+G ++ D   G PV     ++
Sbjct: 278 ESMPLFVMDVIIPCQKLSLHIFEPRYRLMVRRIMEGNHRMGMVALDSATGSPVDVACEVE 337

Query: 323 VTE 315
           +TE
Sbjct: 338 ITE 340


>At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type
          Length = 486

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = -3

Query: 494 EVVPLKSFSVLVNLSQLILKLFEGRFKI---DHLPGLRRLGTLSGDLQHGDPVTSDLLLQ 324
           E +PL    V++   +L L +FE R+++     + G  R+G ++ D   G PV     ++
Sbjct: 278 ESMPLFVMDVIIPCQKLSLHIFEPRYRLMVRRIMEGNHRMGMVALDSATGSPVDVACEVE 337

Query: 323 VTE 315
           +TE
Sbjct: 338 ITE 340


>At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type
          Length = 486

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = -3

Query: 494 EVVPLKSFSVLVNLSQLILKLFEGRFKI---DHLPGLRRLGTLSGDLQHGDPVTSDLLLQ 324
           E +PL    V++   +L L +FE R+++     + G  R+G ++ D   G PV     ++
Sbjct: 278 ESMPLFVMDVIIPCQKLSLHIFEPRYRLMVRRIMEGNHRMGMVALDSATGSPVDVACEVE 337

Query: 323 VTE 315
           +TE
Sbjct: 338 ITE 340


>At1g31420.1 68414.m03848 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profile: PF00069:
           Eukaryotic protein kinase domain
          Length = 592

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = -3

Query: 404 LPGLRRLGTLSGDLQHGDPVTSDLLLQVTELTFHLIAATYLIDELTLEGVTSGF 243
           LPGL++L   S  L    P +   L Q+ +L+   ++  +L+ ++  +GV SGF
Sbjct: 145 LPGLQKLDMSSNTLSGPIPAS---LGQLKKLSNFNVSNNFLVGQIPSDGVLSGF 195


>At3g29180.1 68416.m03657 expressed protein
          Length = 513

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 214 PRARTRRHKQLHFAGKADIVSSPHSETKTPS 122
           PR + RR    HF+  +DIV  PH+  + PS
Sbjct: 14  PRRKGRRRSSKHFSKVSDIV--PHANIRRPS 42


>At3g06330.1 68416.m00729 zinc finger (C3HC4-type RING finger)
           family protein contains InterPro Entry IPR001841
           Zn-finger, RING ; contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 426

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = +3

Query: 579 SPYWGRRASWPGRQALKL 632
           SPYW R  S P RQA KL
Sbjct: 126 SPYWKRCLSLPSRQAAKL 143


>At5g61460.1 68418.m07712 structural maintenance of chromosomes
           (SMC) family protein very strong similarity to SMC-like
           protein (MIM) [Arabidopsis thaliana] GI:5880614;
           contains Pfam profile PF02463: RecF/RecN/SMC N terminal
           domain
          Length = 1057

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
 Frame = +3

Query: 255 NAFQRKFVNEVRRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEK 434
           N  QR+ + ++   DE E  L  L+  ++   +   ++        +  +  +++A FE+
Sbjct: 716 NELQREIMKDLEEIDEKEAFLEKLQNCLKEAELKANKLTALFENMRESAKG-EIDA-FEE 773

Query: 435 LENELREVN---QNAEALKRNY 491
            ENEL+++    Q+AEA K +Y
Sbjct: 774 AENELKKIEKDLQSAEAEKIHY 795


>At5g17930.1 68418.m02102 MA3 domain-containing protein low
           similarity to SP|Q9P6R9 Cell cycle control protein cwf22
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF02847: MA3 domain
          Length = 707

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -3

Query: 557 DPPSHRRKLESSSKYV 510
           D P H RK ESSSKYV
Sbjct: 248 DTPLHERKPESSSKYV 263


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,809,504
Number of Sequences: 28952
Number of extensions: 222170
Number of successful extensions: 844
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)