Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0720
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.1  
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    27   3.1  
SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr...    26   4.2  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   7.3  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 2   SVDPPGLPGYLAQPMQSPKSTPSLP 76
           S+ PP  P   A P++SP S PSLP
Sbjct: 170 SLPPPAQP---AAPVKSPPSAPSLP 191


>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 636 RWELIKPGKNLGGKIFNFNQFVDSRI*TSLPEA 538
           +WE ++ G  LG K+F      DS + +S+  A
Sbjct: 147 KWEGLRTGSTLGKKLFQIENVYDSSLASSVINA 179


>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 206 IQGSRQPTVFKAVADVRRQEAESGGSVFSEDKRGRLFGNGQXRPLNA 346
           IQGS Q     ++ +++ QE+E        +K  +LF NG   PLNA
Sbjct: 160 IQGSIQLARVMSIENIQMQESEK------LEKALKLFTNGDATPLNA 200


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 479  SHESHTFQWVFIFLNLTTESFICLMFNLNRCHV 381
            +H+SH  Q + +  +LT   F+CL  N    H+
Sbjct: 930  NHKSHNNQSLLLAASLTLSKFMCLSNNFCMEHL 962


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,851
Number of Sequences: 5004
Number of extensions: 46168
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)