Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0720
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532...    29   2.5  
03_05_0609 - 26093605-26093730,26094240-26094329,26094687-260948...    29   2.5  
10_07_0102 + 12878740-12878773,12878917-12879014,12879717-12879875     28   5.7  
01_05_0532 - 22992520-22992879,22993323-22993403,22993565-229936...    28   5.7  
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296...    27   9.9  
04_04_1466 - 33799104-33799229,33799659-33799669,33800052-338002...    27   9.9  

>11_01_0657 +
           5322295-5323367,5323436-5323555,5323743-5323791,
           5323968-5324084,5324200-5324268,5324394-5324488,
           5325183-5325521,5327043-5327084,5327814-5327907,
           5328121-5328190,5328719-5329677
          Length = 1008

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = +3

Query: 132 NISRSPGRLQAVAAQPSSRQSQPTVFKAVGSQPYSRQSQTFAVRRRSQEAACSAKTNV 305
           N+   P +LQA+ +  + +  QPT   +   Q   +Q     + +++ +AA +A+ N+
Sbjct: 218 NVKIEPQQLQALRSLSAVKMEQPTSDPSAFLQQQQQQQHLLQLTKQNPQAAAAAQLNL 275


>03_05_0609 -
           26093605-26093730,26094240-26094329,26094687-26094806,
           26094941-26095038,26095207-26095248,26095994-26096173,
           26096361-26096517,26097162-26097249,26097592-26097746,
           26100131-26100412
          Length = 445

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +3

Query: 183 SRQSQPTVFKAVGSQPYSRQSQT-FAVRRRSQEAACSAKTNVADYSETA 326
           S  S P++F A G+Q +S  SQT F+V   +Q+ A S   + A+ S  A
Sbjct: 254 STPSMPSIFSASGAQSFSMPSQTLFSV---NQQPAISGNKSAAEASGDA 299


>10_07_0102 + 12878740-12878773,12878917-12879014,12879717-12879875
          Length = 96

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 599 GKFSTSISLWTQESKPRCQKPLCRQPV 519
           GK ST +SL   E+K    KP C QP+
Sbjct: 18  GKVSTELSLVNLEAKNLHPKPECNQPI 44


>01_05_0532 -
           22992520-22992879,22993323-22993403,22993565-22993639,
           22994140-22994301
          Length = 225

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 168 AAQPS-SRQSQPTVFKAVGSQPYSRQSQTFAVRRRSQEAACSAKTNVADYSETAXRG 335
           A +PS S QS+ T+F    S P  R  Q++ + + S     +A+TN A  +     G
Sbjct: 150 APRPSISDQSKNTIFSNALSSPVRRSLQSYHLTQGSGNGGRNAETNSAGQNRETNSG 206


>10_07_0139 +
           13327851-13327880,13327999-13329049,13329089-13329648,
           13329757-13329904,13330935-13331024,13331148-13331208,
           13331301-13331450,13331571-13331629,13332148-13332282,
           13333028-13333119,13333210-13333278
          Length = 814

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 124 NFTTSPEALAVFKQSQPNRLQGSRSQPYSRQSAANR 231
           +FT+ PE+  + K  + N L GS S P S++   NR
Sbjct: 537 SFTSDPESEPLDKMEKTNELPGSES-PNSQEERQNR 571


>04_04_1466 -
           33799104-33799229,33799659-33799669,33800052-33800200,
           33800261-33800299,33800690-33800746,33800839-33801628,
           33801705-33801980,33802051-33802117,33802211-33802285,
           33802618-33802812,33802927-33803076,33803152-33803522,
           33804070-33804193,33804246-33804275,33804306-33804417,
           33804919-33804985,33805138-33805180,33805768-33805872
          Length = 928

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 209 QGSRQPTVFKAVADVRRQEAESGGSVFSEDKRGRLFGN 322
           + S +    K    VRR+E+ES    +++D +  ++GN
Sbjct: 648 KSSNEEDFVKEPKAVRRKESESSSKRYNDDDKSSMYGN 685


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,685,274
Number of Sequences: 37544
Number of extensions: 371619
Number of successful extensions: 899
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)