Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0720
         (657 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          27   0.52 
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            25   1.6  

>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 27.1 bits (57), Expect = 0.52
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +3

Query: 147 PGRLQAVAAQPSSRQSQPTVFKAVGSQPYSRQSQTFAVRRRSQEAACSAKTNV 305
           PGR  A A  PSS  + P+   +V S P SR S        S ++A     N+
Sbjct: 57  PGRTYASALSPSSSSASPSSPSSVAS-PNSRASNMSPESSASDQSAAYTLQNL 108


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 17/54 (31%), Positives = 19/54 (35%)
 Frame = -1

Query: 546 PEAPLPXACLRTPCLFWVTA*RKPRIPHFSMGVHLLELNNGIVHLPNV*PEPLP 385
           P  P   A L  P  F        R P F +    L    G  +LPN  P P P
Sbjct: 532 PPPPPGGAVLNIPPQFLPPPLNLLRAPFFPLNPAQLRFPAGFPNLPNAQPPPAP 585


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 642,729
Number of Sequences: 2352
Number of extensions: 12322
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 65232180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)