Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0720
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ...    28   5.1  
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.        27   8.9  
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical...    27   8.9  

>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
           protein H20J04.2 protein.
          Length = 1427

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +1

Query: 331 EAVERGNVTHSSGCHVFTWQRFRLNIRQMNDSVVKFKKMNTH*KVWD 471
           EA ER  +  +    + T+ +FR ++ Q  + +V+ K+     K WD
Sbjct: 660 EAPERLEIVKTLIYQLLTYSKFRGHLEQRQNELVELKREQKKLKAWD 706


>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
          Length = 2553

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +1

Query: 382  TWQRFRLNIRQMNDSVVK 435
            TWQR  +N RQ++DS+++
Sbjct: 1642 TWQRMAVNSRQVSDSIMR 1659


>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
            protein Y71G12B.11a protein.
          Length = 2553

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +1

Query: 382  TWQRFRLNIRQMNDSVVK 435
            TWQR  +N RQ++DS+++
Sbjct: 1642 TWQRMAVNSRQVSDSIMR 1659


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,931,634
Number of Sequences: 27780
Number of extensions: 278453
Number of successful extensions: 758
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)