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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0720
         (657 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29510.1 68415.m03584 expressed protein                             28   4.8  
At3g23070.1 68416.m02908 expressed protein contains Pfam domain,...    27   8.3  

>At2g29510.1 68415.m03584 expressed protein
          Length = 839

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 590 STSISLWTQESKPRCQKPLCRQPVSER 510
           STS SLWT ES     + LC  P  ++
Sbjct: 139 STSSSLWTDESSTDSSRGLCASPFRKK 165


>At3g23070.1 68416.m02908 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 881

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 200 NRIQGSRQPTVFKAVADVRRQEAESGGSVFSEDKRGRLFGNG 325
           NRIQ   QP   K V + R++   SG  + S D      G+G
Sbjct: 75  NRIQKRNQPKPPKVVVNYRKEGRFSGSEIVSGDDNRSRDGDG 116


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,450,398
Number of Sequences: 28952
Number of extensions: 267145
Number of successful extensions: 565
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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