Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0718
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    26   5.5  
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa...    25   9.7  
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4...    25   9.7  

>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
 Frame = -2

Query: 279 TAVSGYLIVPKQPG*YANDILKSSVSLFFIVPL-KAAPVPFASSHKGSLPSSTIASRPRF 103
           TA S   +VPK      +D   S+VS  +  P+ + +  P  S  K     +   S P  
Sbjct: 302 TAASFPKVVPKNEISVHHDSSSSNVSPIYKNPVAEQSDTPTRSLPKNYAYVAKSTS-PE- 359

Query: 102 VRSLTSAI*LSLSK*PSDRTPSPLIHSK 19
           ++   + + ++LS  P+ + PSP IH+K
Sbjct: 360 LKVFDTVMPVALSPKPAQKPPSPTIHTK 387


>SPACUNK4.17 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 204 SLFFIVPLKAAPVPFASSHKGSLPSSTIASRPRFVRSL 91
           SLF   P+ AAPV  A +    LPS ++ S    +R L
Sbjct: 154 SLFIEKPISAAPVEDAFAVARRLPSESVISVGYMLRYL 191


>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
           Tip41|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 252

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 22/73 (30%), Positives = 29/73 (39%)
 Frame = -1

Query: 220 LKVVRLSFLHSPFESRTSSICIFPQRFLAFINNSI*AEIREVFDVGYLIEPI*IAIGPDP 41
           +KV R S L S       S   FP   + F NN I  E +    VG+  E     +G  P
Sbjct: 14  IKVQRGSILKSHEMENLQSTLGFPPPEMTFGNNYISIEYKNQPVVGFFTEDALKMVGTKP 73

Query: 40  LATDPFQIAAVSD 2
              D  Q++   D
Sbjct: 74  --EDVMQVSFAKD 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,481,293
Number of Sequences: 5004
Number of extensions: 47547
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)