Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0718
(661 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0014 + 18392622-18392834,18393064-18393147,18393709-183937... 70 2e-12
10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245... 64 1e-10
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850 35 0.066
06_03_0723 + 23875008-23875204,23875311-23875576,23877166-238772... 33 0.27
09_06_0205 - 21567467-21567655,21567791-21567876,21567965-215680... 30 1.4
>11_05_0014 +
18392622-18392834,18393064-18393147,18393709-18393797,
18393889-18394063,18394370-18394489,18394591-18394677,
18394755-18394826,18395166-18395279,18395387-18395487,
18395576-18395669,18395794-18395961,18396287-18396352,
18396475-18396531,18396708-18396927,18397015-18397151,
18397573-18397641,18397722-18397781,18397927-18397998,
18398171-18398218,18398376-18398495,18398743-18398808,
18399341-18399453,18399821-18399905,18400246-18400356,
18400436-18400531,18401075-18401143,18401235-18401453
Length = 974
Score = 69.7 bits (163), Expect = 2e-12
Identities = 35/74 (47%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = +1
Query: 274 RSSGAYIFRPNSTKAIGLNVE-SVSXISGDLLSEVRTKIRGNVLSIKRVYKEFDFIEHEW 450
++SGAYIFRPN T I + + ++ + G +L EV +I + I RVYK D++E E+
Sbjct: 622 QASGAYIFRPNGTVPIKTDGQVPLTVLRGSILDEVHQQINPWIYQINRVYKGKDYVETEF 681
Query: 451 LVGPISVDDGIGKE 492
+VGPI VDDG GKE
Sbjct: 682 IVGPIPVDDGNGKE 695
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/50 (44%), Positives = 33/50 (66%)
Frame = +3
Query: 510 TDIINNGEFYTDSNGRQMLKRKLNARPQWNLTLTEPVPGNYYPVTNEIYI 659
T++ N FYTDS+GR +KR + R +W + + +P+ GNYYPV IY+
Sbjct: 702 TNMATNKTFYTDSSGRDFIKRIRDYRSEWKIEVHQPIAGNYYPVNLGIYV 751
>10_01_0232 +
2456449-2456652,2456814-2456897,2459113-2459201,
2459245-2459452,2459764-2459883,2460004-2460087,
2460171-2460242,2460342-2460455,2460852-2460952,
2461024-2461117,2461265-2461432,2461539-2461616,
2461908-2461973,2462052-2462108,2462353-2462572,
2462867-2463003,2465379-2465450,2465530-2465577,
2465681-2465806,2465982-2466047,2466508-2466620,
2467348-2467432,2467885-2467980,2468067-2468114,
2468190-2468258,2468393-2468581
Length = 935
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/50 (54%), Positives = 34/50 (68%)
Frame = +3
Query: 510 TDIINNGEFYTDSNGRQMLKRKLNARPQWNLTLTEPVPGNYYPVTNEIYI 659
T++ N FYTDSNGR L+R N R W+L L++PV GNYYPV IY+
Sbjct: 694 TNMATNKIFYTDSNGRDFLERVRNHRDDWDLNLSQPVAGNYYPVNQGIYV 743
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +1
Query: 325 LNVESVSXISGDLLSEVRTKIRGNVLSIKRVYKEFDFIEHEWLVGPISV--DDGIGKEYV 498
++ + I G L+ EV + + + R+YK + E E+ +GPI V DD IGKE V
Sbjct: 630 ISAAPLKVIHGPLVDEVHQQFSSWIYQVTRLYKNKEHAEVEYTIGPIPVDDDDDIGKEVV 689
Query: 499 VK 504
+
Sbjct: 690 TR 691
>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
Length = 1173
Score = 34.7 bits (76), Expect = 0.066
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +3
Query: 510 TDIINNGEFYTDSNGRQMLKRKLNARPQWNLTLTEPVPGNYYPVTNEIYI 659
TDI N G FY+D NG QM +R+ + P+ GNYYP+ + ++
Sbjct: 890 TDIDNQGVFYSDLNGFQMSRRQTYDK--------IPLQGNYYPMPSLAFL 931
>06_03_0723 + 23875008-23875204,23875311-23875576,23877166-23877274,
23877577-23878212,23878328-23878573,23878669-23878834,
23878863-23879076,23879580-23880097,23880617-23880683,
23882131-23882215,23882292-23882367,23882593-23882756,
23883088-23883217,23883314-23883430,23883505-23883600,
23883732-23884009,23886571-23886794,23886935-23887011,
23887103-23887145,23887231-23887288,23888371-23888410,
23888891-23889418
Length = 1444
Score = 32.7 bits (71), Expect = 0.27
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +3
Query: 513 DIINNGEFYTDSNGRQMLKRKL---NARPQWNLTLTEPVPGNYYPVTNEIY 656
DI+++ + + G+Q K K+ N P WN LT VP Y P+ ++Y
Sbjct: 982 DILSSDPYVVLTLGQQKAKTKVIKSNLNPVWNEVLTLSVPQKYGPLKLQVY 1032
>09_06_0205 -
21567467-21567655,21567791-21567876,21567965-21568037,
21568267-21568326,21568887-21568935,21569328-21569431,
21569587-21569640,21569719-21569763,21569817-21569879,
21570415-21570615,21570620-21570797,21570900-21570993,
21571075-21572478,21572560-21572604,21572710-21572788,
21573424-21573589,21573679-21573771,21573872-21573929,
21574063-21574120,21574210-21574367,21575130-21575177,
21575269-21575320,21575404-21575529
Length = 1160
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +1
Query: 307 STKAIGLNVESVSXISGDLLSEVRTKIRGNVLSIKRVYK 423
S+++ GLN E+++ +S + EVRTK RG S ++ K
Sbjct: 90 SSRSFGLNGEALASLSDISVVEVRTKARGRPNSYCKIIK 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,460,049
Number of Sequences: 37544
Number of extensions: 318467
Number of successful extensions: 899
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -