Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0718
(661 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40948-5|AAA81731.2| 955|Caenorhabditis elegans Hypothetical pr... 55 4e-08
Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical pr... 36 0.034
Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical pr... 36 0.034
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 30 1.3
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 30 1.3
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 30 1.3
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 30 1.3
U58739-1|AAB00607.1| 392|Caenorhabditis elegans Hypothetical pr... 29 3.9
>U40948-5|AAA81731.2| 955|Caenorhabditis elegans Hypothetical
protein F55D10.1 protein.
Length = 955
Score = 55.2 bits (127), Expect = 4e-08
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Frame = +1
Query: 271 NRSSGAYIFRPNSTKAIGLNVE-SVSXISGDLLSEVRTKIRGNVLSIKRVYKEFDFIEHE 447
++ SGAYIFRP + + I L + ++ + G +++EVR K+ V R+ + ++IE E
Sbjct: 619 DQPSGAYIFRPKTQQPIALTSKLALEVVPGAIINEVRQKVSPFVSQQIRLPRGKNYIEFE 678
Query: 448 WLVGPI--SVDDGIGKEYVVKY 507
W+VGPI + I KE+V +Y
Sbjct: 679 WIVGPIPKETKNPITKEFVTRY 700
Score = 49.6 bits (113), Expect = 2e-06
Identities = 20/50 (40%), Positives = 33/50 (66%)
Frame = +3
Query: 510 TDIINNGEFYTDSNGRQMLKRKLNARPQWNLTLTEPVPGNYYPVTNEIYI 659
T++ + + +TDSNGRQ ++R + + + TEP+ GNYYP+T+ YI
Sbjct: 702 TEVHSKNQSFTDSNGRQAMERFFDGATSFEYSDTEPIAGNYYPITSFGYI 751
>Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical protein
F58H1.1b protein.
Length = 1145
Score = 35.5 bits (78), Expect = 0.034
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 519 INNG-EFYTDSNGRQMLKRKLNARPQWNLTLTEPVPGNYYPVTNEIYI 659
+N+G EF+TD NG QM+KR R Q L P N+YP++ +YI
Sbjct: 890 VNSGDEFFTDLNGMQMIKR----RRQTKL----PTQANFYPMSAGVYI 929
>Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical protein
F58H1.1a protein.
Length = 1143
Score = 35.5 bits (78), Expect = 0.034
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 519 INNG-EFYTDSNGRQMLKRKLNARPQWNLTLTEPVPGNYYPVTNEIYI 659
+N+G EF+TD NG QM+KR R Q L P N+YP++ +YI
Sbjct: 888 VNSGDEFFTDLNGMQMIKR----RRQTKL----PTQANFYPMSAGVYI 927
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 5 ANGSYLEWISGEGVRSDGYLDRLNQIADV-KDLTNLGLDAIVDEGKE 142
A +++ W GEG+ + + +A + KD +G+D++ D G+E
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSMEDNGEE 446
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 5 ANGSYLEWISGEGVRSDGYLDRLNQIADV-KDLTNLGLDAIVDEGKE 142
A +++ W GEG+ + + +A + KD +G+D++ D G+E
Sbjct: 399 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSMEDNGEE 445
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 5 ANGSYLEWISGEGVRSDGYLDRLNQIADV-KDLTNLGLDAIVDEGKE 142
A +++ W GEG+ + + +A + KD +G+D++ D G+E
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSMEDNGEE 446
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 5 ANGSYLEWISGEGVRSDGYLDRLNQIADV-KDLTNLGLDAIVDEGKE 142
A +++ W GEG+ + + +A + KD +G+D++ D G+E
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSMEDNGEE 446
>U58739-1|AAB00607.1| 392|Caenorhabditis elegans Hypothetical
protein F28C10.3 protein.
Length = 392
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +1
Query: 250 GDNEVPANRSSGAYIFRPNSTKAIGLNVESVSXISGDLLSEVRTKIRGNVLSIKRVYKEF 429
G+N PA I + + A G V +V ++G + T V+ +R+ K
Sbjct: 17 GENHAPAATIEDFEILKHIGSGAYG-EVAAVRKLNG---CDTETIYAMKVMEKRRMSKHK 72
Query: 430 DFIEHEWLV 456
D +EHEW +
Sbjct: 73 DMVEHEWKI 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,684,339
Number of Sequences: 27780
Number of extensions: 264545
Number of successful extensions: 607
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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