Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0718
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.6  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   3.4  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   3.4  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   6.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.9  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 441 LNKIEFLVNTLDAQNVSAYLSSNLAE 364
           LN +  + NTLD+ N S  ++ N+A+
Sbjct: 394 LNDLYNVKNTLDSYNGSMEINQNIAQ 419


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 513 DIINNGEFYTDSNGRQMLKRKLNARPQW 596
           D+ ++  F TD      ++ K+N +P W
Sbjct: 410 DVASDRFFITDGEKAARMQAKVNRQPVW 437


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 513 DIINNGEFYTDSNGRQMLKRKLNARPQW 596
           D+ ++  F TD      ++ K+N +P W
Sbjct: 410 DVASDRFFITDGEKAARMQAKVNRQPVW 437


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 485 PMPSSTLIGPTSHSCSIKSNS 423
           P+P+S    P +++CSI SNS
Sbjct: 158 PIPASCCNSPENNTCSI-SNS 177


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 170 GAAFKGTMKKRETDDFKI 223
           GA  K   KK+E+DD K+
Sbjct: 331 GARAKKKSKKKESDDKKV 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,759
Number of Sequences: 438
Number of extensions: 3298
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)