Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0718
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13980.2 68418.m01635 glycosyl hydrolase family 38 protein si...    66   3e-11
At5g13980.1 68418.m01634 glycosyl hydrolase family 38 protein si...    66   3e-11
At5g66150.1 68418.m08333 glycosyl hydrolase family 38 protein si...    61   7e-10
At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein si...    60   1e-09
At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein si...    32   0.39 
At5g07620.1 68418.m00873 protein kinase family protein contains ...    30   1.2  
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ...    30   1.2  
At4g17330.1 68417.m02600 agenet domain-containing protein contai...    29   3.6  
At4g05330.1 68417.m00815 zinc finger and C2 domain protein, puta...    29   3.6  
At1g66840.1 68414.m07597 expressed protein contains Pfam profile...    28   6.3  

>At5g13980.2 68418.m01635 glycosyl hydrolase family 38 protein
           similar to alpha-mannosidase GI:1419374 from [Homo
           sapiens]
          Length = 1024

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
 Frame = +1

Query: 253 DNEVPANRSSGAYIFRPNSTKAIGLNVE-SVSXISGDLLSEVRTKIRGNVLSIKRVYKEF 429
           D E    ++SGAY+FRPN T  I    +  ++ I G L+ EV  +I   +  I RVYK  
Sbjct: 641 DKEPLIPQNSGAYVFRPNGTFPINPEGQVPLTVIHGPLVDEVHQQINPWISQITRVYKGK 700

Query: 430 DFIEHEWLVGPISVDDGIGKEYVVK 504
           + +E E++VG I +DDGIGKE V +
Sbjct: 701 EHVEVEFIVGNIPIDDGIGKEVVTQ 725



 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 21/46 (45%), Positives = 31/46 (67%)
 Frame = +3

Query: 522 NNGEFYTDSNGRQMLKRKLNARPQWNLTLTEPVPGNYYPVTNEIYI 659
           +N  FYTDS+GR  +KR  + R  W L + +P+ GNYYP+ + IY+
Sbjct: 732 SNKTFYTDSSGRDYIKRIRDYRSDWKLDVNQPIAGNYYPINHGIYL 777


>At5g13980.1 68418.m01634 glycosyl hydrolase family 38 protein
           similar to alpha-mannosidase GI:1419374 from [Homo
           sapiens]
          Length = 921

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
 Frame = +1

Query: 253 DNEVPANRSSGAYIFRPNSTKAIGLNVE-SVSXISGDLLSEVRTKIRGNVLSIKRVYKEF 429
           D E    ++SGAY+FRPN T  I    +  ++ I G L+ EV  +I   +  I RVYK  
Sbjct: 641 DKEPLIPQNSGAYVFRPNGTFPINPEGQVPLTVIHGPLVDEVHQQINPWISQITRVYKGK 700

Query: 430 DFIEHEWLVGPISVDDGIGKEYVVK 504
           + +E E++VG I +DDGIGKE V +
Sbjct: 701 EHVEVEFIVGNIPIDDGIGKEVVTQ 725



 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 21/46 (45%), Positives = 31/46 (67%)
 Frame = +3

Query: 522 NNGEFYTDSNGRQMLKRKLNARPQWNLTLTEPVPGNYYPVTNEIYI 659
           +N  FYTDS+GR  +KR  + R  W L + +P+ GNYYP+ + IY+
Sbjct: 732 SNKTFYTDSSGRDYIKRIRDYRSDWKLDVNQPIAGNYYPINHGIYL 777


>At5g66150.1 68418.m08333 glycosyl hydrolase family 38 protein
           similar to lysosomal alpha-mannosidase SP:O09159 from
           [Mus musculus]
          Length = 1047

 Score = 60.9 bits (141), Expect = 7e-10
 Identities = 26/50 (52%), Positives = 33/50 (66%)
 Frame = +3

Query: 510 TDIINNGEFYTDSNGRQMLKRKLNARPQWNLTLTEPVPGNYYPVTNEIYI 659
           TD+    EFYTDSNGR  LKR  + R  W+L + EP+ GNYYP+   +YI
Sbjct: 756 TDMTTAKEFYTDSNGRDFLKRVRDNRTDWHLEVNEPIAGNYYPLNLGMYI 805



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 19/105 (18%)
 Frame = +1

Query: 247 LGDNEVPANRSSGAYIFRPNSTKAIGL----------------NVES-VSXISGDLLSEV 375
           +GD + P  + SGAYIFRPN + A  +                NV+S +  + G L+ EV
Sbjct: 651 VGDAKDP--QVSGAYIFRPNGSLAYPVSSSKICTVTSAFIGNGNVQSKLQIVRGPLIDEV 708

Query: 376 RTKIRGNVLSIKRVYKEFDFIEHEWLVGPISVDDG--IGKEYVVK 504
             +    V  + R+YKE +  E E+ +GPISV  G   GKE + +
Sbjct: 709 HQQFSPWVAQVVRLYKEKEHAEFEFTIGPISVGKGHLTGKEIITR 753


>At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein
           similar to lysosomal alpha-mannosidase GI:3522867 from
           [Homo sapiens]
          Length = 1019

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
 Frame = +1

Query: 274 RSSGAYIFRPNSTKAIGLNVES-VSXISGDLLSEVRTKIRGNVLSIKRVYKEFDFIEHEW 450
           ++SGAY+FRP+    I    E+ ++ + G L  EV  ++   +  I RVYK  +  E E+
Sbjct: 645 QASGAYVFRPDGVLPIKSKEEAQLTIVQGPLFDEVHQELNSWISQITRVYKGKNHAEIEF 704

Query: 451 LVGPISVDDGIGKEYVVK 504
            +GPI  DDGI KE + K
Sbjct: 705 TIGPIPADDGISKEIITK 722



 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 25/50 (50%), Positives = 33/50 (66%)
 Frame = +3

Query: 510 TDIINNGEFYTDSNGRQMLKRKLNARPQWNLTLTEPVPGNYYPVTNEIYI 659
           T +  NG FYTDSNGR  +KR  + R  W+L + +PV GNYYP+   IY+
Sbjct: 725 TTMKTNGTFYTDSNGRDFIKRIRDFRTDWDLQVYQPVAGNYYPLNLGIYM 774


>At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein similar
            to alpha-mannosidase II SP:P27046 from [Mus musculus]
          Length = 1173

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +3

Query: 510  TDIINNGEFYTDSNGRQMLKRKLNARPQWNLTLTEPVPGNYYPVTNEIYI 659
            TD+ N   FY+D NG QM +R+   +         P+ GNYYP+ +  +I
Sbjct: 887  TDVDNKKVFYSDLNGFQMSRRETYDK--------IPLQGNYYPMPSLAFI 928


>At5g07620.1 68418.m00873 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 359

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = +2

Query: 5   ANGSYLEWISGEGVRSDGYLDRLNQIADVKDLTNLGLDAI-VDEGKEPLWEDANGTGAAF 181
           A    L+  + EG ++   + ++  ++   D+ +LG+  + +  GKEP+ E+A G    +
Sbjct: 233 AGQEILDVSAAEGYKAPELI-KMKDVSKESDVYSLGVIMLELVSGKEPINENATGDDEFY 291

Query: 182 KGTMKKRETDDFKISFAYYPGCLGT 256
                +    D ++S  Y P  LG+
Sbjct: 292 LPDFMRNAVLDHRLSDLYRPEILGS 316


>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
           binding domain-containing protein contains Pfam profiles
           PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
           binding domain
          Length = 2176

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +2

Query: 92  KDLTNLGLDAIVDEGKEPLWEDANGTGAAFKGTMKKRETDDFKISFAYYPGCLGTM 259
           KD T   L ++ DE ++P    A  T A+     K  ++ DFKIS +    C+G +
Sbjct: 826 KDSTATKLFSLFDESRQPF--PAKNTSASELKEKKAGDSSDFKISDSSRGSCVGAL 879


>At4g17330.1 68417.m02600 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 1058

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = -3

Query: 479 PSSTLIGPTSHSCSIKSNSL*TR-LMLKTFPRI---LVRTSLSRSPLIXLT 339
           P+ST++ P  HS  +KS       + +++ P I   L +T L+ SPL+  T
Sbjct: 188 PTSTVVAPAQHSTRVKSRKRKKMPVSVESGPNILNSLKQTELAASPLVPFT 238


>At4g05330.1 68417.m00815 zinc finger and C2 domain protein,
           putative similar to zinc finger and C2 domain protein
           GI:9957238 from [Arabidopsis thaliana]
          Length = 336

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +3

Query: 513 DIINNGEFYTDSNGRQMLKRKL---NARPQWNLTLTEPVPGNYYPVTNEIY 656
           D++++  +   + G+Q L+  +   N  P WN  L   VP +Y PV  ++Y
Sbjct: 196 DMMSSDPYVVLNLGKQKLQTTVMNSNLNPVWNQELMLSVPESYGPVKLQVY 246


>At1g66840.1 68414.m07597 expressed protein contains Pfam profile
           PF05701: Plant protein of unknown function (DUF827);
           expression supported by MPSS
          Length = 607

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +1

Query: 307 STKAIGLNVESVSXISG-DLLSEVRTKIR-GNVLSIKRVYKE 426
           STKAI +  ES+  +SG  +L E R   R    LSIKR+ ++
Sbjct: 487 STKAIMIKTESLKRVSGKTMLEEERESFRMQRSLSIKRLVQD 528


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,110,551
Number of Sequences: 28952
Number of extensions: 255320
Number of successful extensions: 681
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)