Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0717
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    28   1.6  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    27   2.8  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    26   4.8  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    26   6.4  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   8.5  

>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -3

Query: 169 VALTILEIIFLVHHRNINCRFGVNIE 92
           V LT  E++ ++H RN+N  FGV+++
Sbjct: 75  VRLTKDEVVCILHDRNLNRVFGVDVD 100


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 579 PVPSFDADSAIRSSNLSPTESLI 647
           P P  DA SAI SS++S  E L+
Sbjct: 647 PTPELDASSAIPSSSISHDEDLL 669


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 211 RCQHGYRAAERN*WPDGILQKLADGYDLTS 300
           + Q  ++   R  WP+GI  KL D Y+  S
Sbjct: 115 KIQLSFKGKSRTEWPEGIPPKLFDTYEENS 144


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -2

Query: 710 LLVVNVCTKXIHHFPHGIWHRNERFRGRKIAATNGRISIKGR 585
           L+   V  + + H  HG+W + E F G     T   I + GR
Sbjct: 860 LVTSEVYVRLLMH--HGLWQKLEEFLGELRTQTKCSIKLSGR 899


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 146 NFKYGESHDLNAQLLEMAYEGNDASMVIVLPNE 244
           N  Y ES         + YEGND +M+I  P +
Sbjct: 557 NEGYLESQISTELFANLRYEGNDTTMMIAKPKD 589


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,097,994
Number of Sequences: 5004
Number of extensions: 63863
Number of successful extensions: 195
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)