Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0717
         (735 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      80   2e-15
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      74   1e-13
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      71   1e-12
SB_21128| Best HMM Match : Arg_repressor (HMM E-Value=1.9)             30   1.7  
SB_7411| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_43370| Best HMM Match : RhoGAP (HMM E-Value=1.6e-18)                29   3.9  
SB_27580| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_12713| Best HMM Match : TP2 (HMM E-Value=2.9)                       28   6.8  
SB_45263| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0026)               28   9.0  
SB_30435| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 35/83 (42%), Positives = 50/83 (60%)
 Frame = +2

Query: 8   TRLVLVNALYFKGTWQNQFDSISTMERPFYVDTETTVNIPMMYQENNFKYGESHDLNAQL 187
           T L LVNA+YFKG+W   F+  +T    F       + +  MYQ + F+Y ES  L  Q+
Sbjct: 158 TILCLVNAVYFKGSWMKHFNRNATQSGKFKTTPSQEIQVQFMYQSSEFRYLESSTLGCQI 217

Query: 188 LEMAYEGNDASMVIVLPNEINGL 256
           +E+ Y G   SMV++LPNE++GL
Sbjct: 218 VELPYAGEKLSMVVLLPNEVDGL 240



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
 Frame = +1

Query: 325 KVRVTVPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDNDEPLYVSKAVQKAFIEV 504
           +V VT+PKF +  E  L + L  +G   +F+   + L+ I  +  PL VS+ V KAF+EV
Sbjct: 266 EVEVTLPKFTLTQEFSLGETLKGMGASDLFSPGKADLSGI--SAAPLVVSEVVHKAFVEV 323

Query: 505 NGKAPKQPPPQQLGIAFCS-----AFLTSHQYLPLMLIRPFVAAIFRPR 636
           N +         +GI   S      F  +H +L L+      A +F  R
Sbjct: 324 NEEGTIAAAATGVGIMLMSMPMNPVFYANHPFLFLIRHNDTGAVLFMGR 372


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 35/86 (40%), Positives = 47/86 (54%)
 Frame = +2

Query: 8   TRLVLVNALYFKGTWQNQFDSISTMERPFYVDTETTVNIPMMYQENNFKYGESHDLNAQL 187
           TRL LVNA+YFKG W   F    +    F   +   V + MM+Q++ FKY  S     +L
Sbjct: 121 TRLTLVNAIYFKGMWDKPFKKEHSHSSEFRTTSSNEVEVEMMFQKSKFKYLHSDKYKCKL 180

Query: 188 LEMAYEGNDASMVIVLPNEINGLTGY 265
           LE+ Y     SMV+VLP+E  GL  +
Sbjct: 181 LELPYVDTQLSMVLVLPDETEGLARF 206



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 25/73 (34%), Positives = 42/73 (57%)
 Frame = +1

Query: 289 DLTSELDKMFSTKVRVTVPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDNDEPLY 468
           D+ + +       V V +PKFK+ +E  L + L +LG++ +F++  +  T I    E L+
Sbjct: 217 DIFNSVSSQRPADVEVYIPKFKMTSEFKLNEALQELGMKKMFDQAAADFTGISLPPEHLF 276

Query: 469 VSKAVQKAFIEVN 507
           VS  + KAF+EVN
Sbjct: 277 VSAVLHKAFVEVN 289


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 30/87 (34%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
 Frame = +2

Query: 2   AFTRLVLVNALYFKGTWQNQFDSISTMERPFYV--DTETTVNIPMMYQENNFKYGESHDL 175
           + TRL++VNA+YFKG W+ +F   +T    F+V    E+ + + MM ++    +    D+
Sbjct: 124 SLTRLIIVNAVYFKGVWKKEFGEENTFHAAFFVPESHESKIEVEMMTRKMKVNFYYDADI 183

Query: 176 NAQLLEMAYEGNDASMVIVLPNEINGL 256
             +++E+ Y G+D +MVI+LP E +G+
Sbjct: 184 KCRVVELPYSGDDTAMVIILPEEPSGI 210



 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
 Frame = +1

Query: 253 PDGI--LQKLADGYDLTSELDKMFSTKVRVTVPKFKIETEIDLLQVLPKLGIQAIFNRQN 426
           P GI  L+K  D   +      M +T V V++PKF++  +++L  +L  LG+  IF+ + 
Sbjct: 207 PSGIFSLEKSIDVEIMEKWRRLMINTTVEVSIPKFRLSQKLELRSLLQDLGVSDIFDSRK 266

Query: 427 SGLTKILDNDEPLYVSKAVQKAFIEVN 507
           + L+ I    + LYVS A+ KA IEVN
Sbjct: 267 ADLSGI-SAAKGLYVSSAIHKAHIEVN 292


>SB_21128| Best HMM Match : Arg_repressor (HMM E-Value=1.9)
          Length = 381

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 433 LTKILDNDEPLYVSKAVQKAFIEVNGK 513
           +TK LD DEPL +  + +KA +E N K
Sbjct: 80  ITKNLDKDEPLRIEISARKAVLEANRK 106


>SB_7411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 313 MFSTKVRV-TVPKFKIETEIDLLQVLP 390
           ++S  VR+ TVPK K E EID L++ P
Sbjct: 87  LYSPSVRIYTVPKIKHENEIDSLKLFP 113


>SB_43370| Best HMM Match : RhoGAP (HMM E-Value=1.6e-18)
          Length = 865

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 668 PHGIWHRNERFRGRKIAATNGRISIKGRYWWLVKNALQNAMPNC 537
           P G  HR+ R  G+ +  + G     G  WW  + ALQ+    C
Sbjct: 460 PCGERHRHYRATGKPVVRSTGTTERPGNLWW-EEQALQSDRETC 502


>SB_27580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +1

Query: 469 VSKAVQKAFIEVNGKAPKQPPPQQLGIAFCSAFLTSHQYLPLMLIRPFVAAI 624
           +S A++KA   +  K+P  PP +QL +  C +  T    +   +  PF+A I
Sbjct: 127 LSVAIRKANSILETKSPSSPPLRQLVVMNCLSSFTWTVSVGTKIWAPFMAVI 178


>SB_12713| Best HMM Match : TP2 (HMM E-Value=2.9)
          Length = 349

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/44 (27%), Positives = 17/44 (38%)
 Frame = -2

Query: 674 HFPHGIWHRNERFRGRKIAATNGRISIKGRYWWLVKNALQNAMP 543
           H  HG       +R  K   TN  + +  ++WW      QN  P
Sbjct: 2   HDGHGPEFHKHMYRINKATGTNITVDVYRQHWWKCNGPCQNRPP 45


>SB_45263| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0026)
          Length = 123

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 716 GILLVVNVCTKXIHHFPHGIWHRNERFRG 630
           G++ + + C +  HH     W++N+R+RG
Sbjct: 12  GLVELTSCCKQAAHHKCLDQWYKNQRYRG 40


>SB_30435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 457

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 633 WAKDCCYEWPNQHQRKV 583
           W KDC  +WPN+  +K+
Sbjct: 191 WRKDCLTKWPNEVSKKL 207


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,651,482
Number of Sequences: 59808
Number of extensions: 485162
Number of successful extensions: 1215
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)