Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0716
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376           29   2.1  
01_06_0628 + 30707353-30707548,30707846-30707958,30708090-307081...    28   4.9  
10_08_0786 - 20540061-20542106                                         28   6.5  
02_01_0198 + 1334563-1334994,1335872-1335919,1336096-1336351,133...    28   6.5  
04_01_0249 - 3284107-3286377                                           27   8.5  

>10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376
          Length = 746

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 26  GSSTTGLLGRGVSYSD*WWLRDDGLHQGTNG 118
           GS T G +G G   SD WW +D+G   G+NG
Sbjct: 369 GSRTGGTMGSGTG-SDWWWKQDNG--GGSNG 396


>01_06_0628 +
           30707353-30707548,30707846-30707958,30708090-30708197,
           30708305-30708543,30708774-30708861,30708942-30709075,
           30709285-30709498,30709671-30709759,30710194-30710262,
           30710560-30710683
          Length = 457

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -2

Query: 351 ASSIWSSLVWTKVSPRGSM--PILYISMNCLTTSNSCTC 241
           A+ +++ ++W  +    S+  P+++I  NC  +S+SC C
Sbjct: 355 ATMLFADVIWQPMEEANSIAWPLIHI-FNCFASSSSCLC 392


>10_08_0786 - 20540061-20542106
          Length = 681

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 260 VVKQFMEMYKMGMLPRGETFVHTNELQMEEAVKVFRVLYYAK 385
           V K  +EM KMG +PR E   H     +EE VK  ++ Y+++
Sbjct: 578 VAKLDLEMRKMGYIPRTEFVYH----DLEEEVKEQQLSYHSE 615


>02_01_0198 +
           1334563-1334994,1335872-1335919,1336096-1336351,
           1336733-1336881,1336969-1337097,1337425-1337592,
           1338416-1338610
          Length = 458

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 34  YYWPAWPRRQLQRLVVATGR 93
           + WP WP   + RLVVAT +
Sbjct: 88  FRWPGWPGASVFRLVVATDK 107


>04_01_0249 - 3284107-3286377
          Length = 756

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/49 (22%), Positives = 27/49 (55%)
 Frame = +3

Query: 135 MKELCIMKLLDHILQPTMFEDIKEIAKEYNIEKSCDKYMNSMSLSSSWR 281
           + +L + ++LD+  +PT +    +   +YN+   C +Y  S + + +W+
Sbjct: 365 VSDLNLFRILDNNKKPTRYRMWSQTIGQYNLLHECTRY-ESEARTKNWK 412


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,703,235
Number of Sequences: 37544
Number of extensions: 305573
Number of successful extensions: 919
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)