Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0716
         (595 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37217| Best HMM Match : 7tm_1 (HMM E-Value=0.0005)                  29   2.8  
SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11)                  29   3.7  
SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_40684| Best HMM Match : NIF (HMM E-Value=0)                         28   4.9  
SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28)                  28   6.5  
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)                       28   6.5  
SB_11363| Best HMM Match : Transposase_11 (HMM E-Value=2.3e-39)        27   8.6  

>SB_37217| Best HMM Match : 7tm_1 (HMM E-Value=0.0005)
          Length = 228

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = -2

Query: 411 AVLMKTSKSLA**RTRKTLTASSIWS-SLVWTKVSPRGSMPILYISMNCLTTSNSCTCRN 235
           A+ +K S      + R   T ++IW  SLV      +  +P+  I M  +  S    C +
Sbjct: 123 AIYLKNSYLFVVTKKRVFATIAAIWLYSLVTLTYDNKNLLPLYCILMATIIVSLGVVCVS 182

Query: 234 FSRCYTPWR 208
           + +C+T  R
Sbjct: 183 YGKCFTAIR 191


>SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11)
          Length = 1417

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 579 HLHH--KGFTDDMAVNEEVGIDLVRRGR*RPLQSVLWKH 469
           HLHH  KG T+DMA      ++ VR+GR   +  V  +H
Sbjct: 289 HLHHVRKGRTEDMACVTHRLLNHVRKGRTEDMACVTHRH 327



 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -2

Query: 579 HLHH--KGFTDDMAVNEEVGIDLVRRGR*RPLQSVLWKH 469
           HL+H  KG T+DMA      ++ VR+GR R +  V  +H
Sbjct: 137 HLNHVRKGRTEDMARATHRHLNHVRKGRARNMARVTHRH 175



 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 579 HLHH--KGFTDDMAVNEEVGIDLVRRGR*RPLQSVLWKH 469
           HLHH  KG T+DMA      ++ VR+GR   +  V  +H
Sbjct: 460 HLHHVRKGRTEDMACVTHRHLNHVRKGRAGNIARVTHQH 498


>SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1626

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 26/91 (28%), Positives = 44/91 (48%)
 Frame = -2

Query: 474 KHAAVKA*TNMPPLXLSLIQHAVLMKTSKSLA**RTRKTLTASSIWSSLVWTKVSPRGSM 295
           K A+V A + +P   L  +  A++  T  S +  RT+   +ASS  +SL  T  S   S 
Sbjct: 207 KTASVSA-SPVPSSYLQTVSKALVTSTENSTSK-RTKSLSSASSSAASLATTAFSTCSSS 264

Query: 294 PILYISMNCLTTSNSCTCRNFSRCYTPWRSP 202
              +I+ + L + NS T +  +    P ++P
Sbjct: 265 GSTFIAAHQLKSGNSGTKKTIN-MLNPGKAP 294


>SB_40684| Best HMM Match : NIF (HMM E-Value=0)
          Length = 402

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +2

Query: 296 MLPRGETFVHTNELQMEEAVKVFRVLYYAKDFDVFMRTACWMR---ERXNGGMFVYAFTA 466
           +L   ET VH +  ++E+A   F V Y    + VF+RT   ++   ER +    V  FTA
Sbjct: 220 VLDLDETLVHCSLNKLEDATLSFPVSYQDITYQVFVRTRPHLKYFLERVSKVFEVILFTA 279

Query: 467 A 469
           +
Sbjct: 280 S 280


>SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28)
          Length = 336

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 371 LYYAKDFDVFMRTACWMRERXNGGMFVYAFTAACFHRTD 487
           L+  ++F+V   T C + ER N      + +  CF+  D
Sbjct: 70  LFLVRNFEVAKVTVCCLHERSNAHCSKMSLSCVCFNHED 108


>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
          Length = 960

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = -2

Query: 276 MNCLTTSNSCTCRNFS---RCYTPWRSP*CPQTWSAGGYG 166
           + CL  +N  TC   +    C T W  P C  + SAG YG
Sbjct: 670 LKCLCANNG-TCNAITGRCSCGTGWTGPSCNASCSAGRYG 708


>SB_11363| Best HMM Match : Transposase_11 (HMM E-Value=2.3e-39)
          Length = 402

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 455 AFTAACFHRTDCKGLYLPLLTRSIPTSSLT 544
           + T AC    DCK L L  L R++PT + T
Sbjct: 25  SLTLACHALLDCKTLTLTELGRNLPTKART 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,121,655
Number of Sequences: 59808
Number of extensions: 335927
Number of successful extensions: 997
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)