Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0716
         (595 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC146771-1|AAI46772.1| 1649|Homo sapiens CTD-binding SR-like pro...    31   2.3  
AB040975-1|BAA96066.1| 1654|Homo sapiens KIAA1542 protein protein.     31   2.3  
BC012978-1|AAH12978.1|  368|Homo sapiens ankyrin repeat domain 4...    31   4.1  
U77493-1|AAB19224.1|  263|Homo sapiens Notch2 protein.                 30   5.4  
K01747-1|AAA51586.1|  330|Homo sapiens ACTA2 protein.                  29   9.4  
J05192-1|AAA51577.1|  377|Homo sapiens ACTA3 protein.                  29   9.4  

>BC146771-1|AAI46772.1| 1649|Homo sapiens CTD-binding SR-like
           protein rA9 protein.
          Length = 1649

 Score = 31.5 bits (68), Expect = 2.3
 Identities = 23/61 (37%), Positives = 27/61 (44%)
 Frame = -1

Query: 508 GQVETLAVGSVEARGSKSVDEHASVXPFSHPARSPHENIEVLSVVEDSEDFDGFFHLELV 329
           G  E  +VGS    G  S  EH           S  E++E  S  EDSED DG   LE+ 
Sbjct: 29  GDFEESSVGSSGDSGDDSDSEHGDGTDGEDEGASEEEDLEDRSGSEDSED-DGETLLEVA 87

Query: 328 G 326
           G
Sbjct: 88  G 88


>AB040975-1|BAA96066.1| 1654|Homo sapiens KIAA1542 protein protein.
          Length = 1654

 Score = 31.5 bits (68), Expect = 2.3
 Identities = 23/61 (37%), Positives = 27/61 (44%)
 Frame = -1

Query: 508 GQVETLAVGSVEARGSKSVDEHASVXPFSHPARSPHENIEVLSVVEDSEDFDGFFHLELV 329
           G  E  +VGS    G  S  EH           S  E++E  S  EDSED DG   LE+ 
Sbjct: 34  GDFEESSVGSSGDSGDDSDSEHGDGTDGEDEGASEEEDLEDRSGSEDSED-DGETLLEVA 92

Query: 328 G 326
           G
Sbjct: 93  G 93


>BC012978-1|AAH12978.1|  368|Homo sapiens ankyrin repeat domain 40
           protein.
          Length = 368

 Score = 30.7 bits (66), Expect = 4.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 195 DIKEIAKEYNIEKSCDKYMNSMSLSSSWRCIRWACSR 305
           DI+E+ K   +E   D  +NS +  + W C+ WAC R
Sbjct: 22  DIREVQKL--VESGVD--VNSQNEVNGWTCLHWACKR 54


>U77493-1|AAB19224.1|  263|Homo sapiens Notch2 protein.
          Length = 263

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
 Frame = -2

Query: 306 RGSMPILYISMNCLTTSNSCT---CRNFSRCYTPWRSP--*CPQTWSAGGY 169
           R S P+ Y   NC T  N C+   C+N   C     SP   CP  W  G Y
Sbjct: 82  RCSCPLGYTGKNCQTLVNLCSRSPCKNKGTCVQKKASPQCLCPSGW-VGAY 131


>K01747-1|AAA51586.1|  330|Homo sapiens ACTA2 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 9.4
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +2

Query: 245 VHEFDVVKQFMEMYKMGMLP-RGETFVHTNELQMEEAVKVFRVLYYAKDFDVFMRTACW 418
           +   D+  + +  Y M +L  RG +FV T E ++   +K  ++ Y A DF+  M TA W
Sbjct: 177 IMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKE-KLCYVALDFENEMATAAW 234


>J05192-1|AAA51577.1|  377|Homo sapiens ACTA3 protein.
          Length = 377

 Score = 29.5 bits (63), Expect = 9.4
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +2

Query: 245 VHEFDVVKQFMEMYKMGMLP-RGETFVHTNELQMEEAVKVFRVLYYAKDFDVFMRTACW 418
           +   D+  + +  Y M +L  RG +FV T E ++   +K  ++ Y A DF+  M TA W
Sbjct: 177 IMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKE-KLCYVALDFENEMATAAW 234


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,892,273
Number of Sequences: 237096
Number of extensions: 1550207
Number of successful extensions: 3599
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3599
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6268037466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)