Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0716
         (595 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27110.2 68415.m03258 far-red impaired responsive protein, pu...    29   2.3  
At2g27110.1 68415.m03257 far-red impaired responsive protein, pu...    29   2.3  
At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta...    29   2.3  
At4g20160.1 68417.m02949 expressed protein ; expression supporte...    29   3.1  

>At2g27110.2 68415.m03258 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 851

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +2

Query: 311 ETFVHT-NELQMEEAVKVFRVLYYAKDFDVFMRTACWMRERXN 436
           ETF HT N ++ +     FRV  +  D   ++ T C+   R N
Sbjct: 495 ETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRAN 537


>At2g27110.1 68415.m03257 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 851

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +2

Query: 311 ETFVHT-NELQMEEAVKVFRVLYYAKDFDVFMRTACWMRERXN 436
           ETF HT N ++ +     FRV  +  D   ++ T C+   R N
Sbjct: 495 ETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRAN 537


>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-containing
            protein contains Pfam profile PF00226: DnaJ domain
          Length = 2554

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -1

Query: 511  EGQVETLAVGSVEAR--GSKSVDEHASVXPFSHPARSPHENIEV 386
            EG+ ET++ G V+A   GS  V+E  S  P S P ++P E + +
Sbjct: 2331 EGRRETMSSGEVKAEEIGSDGVNE--STDPSSLPGQTPQERVRL 2372


>At4g20160.1 68417.m02949 expressed protein ; expression supported
           by MPSS
          Length = 1188

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -1

Query: 550 HGCQRRSRDRSRKEGQVETLAVGSVEARGSKSVD 449
           HG + R ++R+  +   ETL++ + EA+ +K ++
Sbjct: 758 HGSKERDKERNSSQNGEETLSLRNSEAKSTKEIE 791


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,075,464
Number of Sequences: 28952
Number of extensions: 230740
Number of successful extensions: 653
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)